G43673


Basic Information

Item Value
gene id G43673
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28389689 ~ 28389960 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU54444
gtctcctctgttccagggtgaaaaggttcagttcctcagtctctcagtaggacattcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcgatatctttcttgaagtgtggagcccagaactgtacacagtatccagatgagctctaactagtgcattgtacagtctgaacatcactgcccttgttctcaattctacacttttgacaatataccctaacaatctgtttgccttttttattgcttccccac

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54444 True 272 lncRNA 0.45 1 28389689 28389960

Neighbor

gene id symbol gene type direction distance location
AMCG00013327 NA coding upstream 46202 28322909 ~ 28343487 (+)
AMCG00013328 NA coding upstream 84081 28303353 ~ 28305608 (+)
AMCG00013323 NA coding upstream 135282 28236783 ~ 28254407 (+)
AMCG00013324 NA coding upstream 155207 28227569 ~ 28234482 (+)
AMCG00013320 sumo2,sumo2b,LOC106606624,LOC108411789,LOC106564670 coding upstream 165253 28219066 ~ 28224436 (+)
AMCG00013329 tnrc6c,LOC107724432 coding downstream 74402 28464362 ~ 28483978 (+)
AMCG00013330 LOC108424797 coding downstream 176138 28566098 ~ 28582254 (+)
AMCG00013335 NA coding downstream 209943 28599903 ~ 28606883 (+)
AMCG00013334 NA coding downstream 220145 28610105 ~ 28610395 (+)
AMCG00013333 NA coding downstream 221343 28611303 ~ 28623511 (+)
G43438 NA non-coding upstream 971902 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 1379038 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 1459436 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 1604128 26784953 ~ 26785561 (+)
G43138 NA non-coding upstream 2545095 25807419 ~ 25844594 (+)
G43712 NA non-coding downstream 348163 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 760018 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 766739 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 787091 29177051 ~ 29178266 (+)
G43855 NA non-coding downstream 789138 29179098 ~ 29202721 (+)
AMCG00013317 NA other upstream 316890 28007514 ~ 28072799 (+)
AMCG00013310 NA other upstream 453751 27928708 ~ 27935938 (+)
G43476 NA other upstream 798871 27589139 ~ 27590818 (+)
AMCG00013298 NA other upstream 974403 27385665 ~ 27415286 (+)
G43434 NA other upstream 1230968 27158302 ~ 27158721 (+)
G43682 NA other downstream 94313 28484273 ~ 28488783 (+)
AMCG00013336 NA other downstream 286582 28676542 ~ 28686138 (+)
G43802 NA other downstream 714329 29104289 ~ 29104577 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 1250663 29640623 ~ 29667051 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 1495802 29885762 ~ 29928697 (+)

Expression


Co-expression Network