G43688


Basic Information

Item Value
gene id G43688
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28477155 ~ 28477508 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU54460
AGAGAGGGTACGGAGAGTAGGAGTTGGGAGAAGACTGCTGCTCTTTGGTCTGCAGGTCACTGAGGCCTTGGgcctgggggtggggtgggtagCTGTCCAGGGCTGATTTGCCGGCGCCGGGGTGCAGGCTGGGGTGAGGaggcggctgctgctgcttcataAGCAGGGCCTGGGCCAGCTGGCGCTGGTGCTGTTGGATTTGCTGCTGCATGTTATTGATTGTACGTGCAACCTGCGAAAAGAGCATCTTGTCAAGGGTGGGGTATTCGTTTAGGTTTAAACAACTGAGAACTGAATGAGCCTTATTGTGTATAAATCATGAATTTATTGACTCTTGACACTGTTCAGCCTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54460 True 354 lncRNA 0.54 1 28477155 28477508

Neighbor

gene id symbol gene type direction distance location
AMCG00013326 nup85,LOC106601803 coding downstream 259097 28210403 ~ 28218058 (-)
AMCG00013325 LOC107724659,LOC107579769 coding downstream 277362 28196957 ~ 28199793 (-)
AMCG00013319 mchr1,LOC103354888,LOC107580882 coding downstream 347023 28128668 ~ 28130132 (-)
AMCG00013318 NA coding downstream 398453 28074541 ~ 28078702 (-)
AMCG00013313 stx8 coding downstream 549828 27917922 ~ 27927327 (-)
AMCG00013331 NA coding upstream 15438 28492946 ~ 28495999 (-)
AMCG00013332 NA coding upstream 24514 28502022 ~ 28521437 (-)
AMCG00013339 nptx1l,LOC107665615,LOC107569544,LOC106601408,LOC103375324 coding upstream 294425 28771933 ~ 28777474 (-)
AMCG00013348 prpsap1,LOC106606986,LOC106533983,LOC108255900,LOC105013149,LOC101163819 coding upstream 497182 28974690 ~ 28989005 (-)
AMCG00013349 LOC105417629 coding upstream 513929 28991437 ~ 28996380 (-)
G43687 NA non-coding downstream 1055 28475456 ~ 28476100 (-)
G43686 NA non-coding downstream 1829 28475108 ~ 28475326 (-)
G43685 NA non-coding downstream 6618 28470334 ~ 28470537 (-)
G43670 NA non-coding downstream 129681 28343277 ~ 28347474 (-)
G43626 NA non-coding downstream 242449 28229410 ~ 28234706 (-)
G43689 LOC107601217,LOC107724432,LOC107698663,LOC107753100 non-coding upstream 2577 28480085 ~ 28480483 (-)
G43690 NA non-coding upstream 4224 28481732 ~ 28482055 (-)
G43691 NA non-coding upstream 11334 28488842 ~ 28491096 (-)
G43714 NA non-coding upstream 199316 28676824 ~ 28767352 (-)
G43724 NA non-coding upstream 238783 28716291 ~ 28717940 (-)
G43684 NA other downstream 9249 28467312 ~ 28467906 (-)
G43594 NA other downstream 404368 28068213 ~ 28072787 (-)
G43473 NA other downstream 908004 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 1184082 27273229 ~ 27293073 (-)
AMCG00013264 NA other downstream 1919831 26553549 ~ 26557324 (-)
G43869 NA other upstream 775888 29253396 ~ 29254316 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 1448875 29926383 ~ 30028230 (-)
AMCG00013384 NA other upstream 1562697 30040205 ~ 30061634 (-)
AMCG00013386 NA other upstream 1603106 30080614 ~ 30083441 (-)
AMCG00013390 NA other upstream 1688309 30165817 ~ 30184424 (-)

Expression


Co-expression Network