G43689 (LOC107601217,LOC107724432,LOC107698663,LOC107753100)


Basic Information

Item Value
gene id G43689
gene name LOC107601217,LOC107724432,LOC107698663,LOC107753100
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28480085 ~ 28480483 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU54461
CTACACAACAGGACTTatatcacttttgttttgttatcctGATTAAAACGTGGAGCTCAGCATCAACACAAAAGGTGACGCATTCATTAGGTAACTTGACTTAAATACAACAGGTACTGAATAACCAAACACTGTTGGACCGGGACCTGCAAATCCTCTCAGAGCCGAGGCAAGGGTCAGGCATACCCGAGTAAGAGCTGCTCCAGCCGGGCACCAGGCCCAGCGCGCTGCCGCCCCACGTCGAGGACGGCTTGGTGTTGGTAAGGCCAGGAGGGGGCCGGGTGGGAGCCGTAGTGTTTCGGGGGCCTTGCGGCACTTTCCACAGCTCGTGAGATAGCGAGGCCTGGGTGTGGGAGATGGGGCCGGGAGACCAGGTGGACTTCATGTCCGAGAGTTTAC

Function

NR:

description
PREDICTED: trinucleotide repeat-containing gene 6C protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54461 True 399 lncRNA 0.56 1 28480085 28480483

Neighbor

gene id symbol gene type direction distance location
AMCG00013326 nup85,LOC106601803 coding downstream 262027 28210403 ~ 28218058 (-)
AMCG00013325 LOC107724659,LOC107579769 coding downstream 280292 28196957 ~ 28199793 (-)
AMCG00013319 mchr1,LOC103354888,LOC107580882 coding downstream 349953 28128668 ~ 28130132 (-)
AMCG00013318 NA coding downstream 401383 28074541 ~ 28078702 (-)
AMCG00013313 stx8 coding downstream 552758 27917922 ~ 27927327 (-)
AMCG00013331 NA coding upstream 12463 28492946 ~ 28495999 (-)
AMCG00013332 NA coding upstream 21539 28502022 ~ 28521437 (-)
AMCG00013339 nptx1l,LOC107665615,LOC107569544,LOC106601408,LOC103375324 coding upstream 291450 28771933 ~ 28777474 (-)
AMCG00013348 prpsap1,LOC106606986,LOC106533983,LOC108255900,LOC105013149,LOC101163819 coding upstream 494207 28974690 ~ 28989005 (-)
AMCG00013349 LOC105417629 coding upstream 510954 28991437 ~ 28996380 (-)
G43688 NA non-coding downstream 2577 28477155 ~ 28477508 (-)
G43687 NA non-coding downstream 3985 28475456 ~ 28476100 (-)
G43686 NA non-coding downstream 4759 28475108 ~ 28475326 (-)
G43685 NA non-coding downstream 9548 28470334 ~ 28470537 (-)
G43670 NA non-coding downstream 132611 28343277 ~ 28347474 (-)
G43690 NA non-coding upstream 1249 28481732 ~ 28482055 (-)
G43691 NA non-coding upstream 8359 28488842 ~ 28491096 (-)
G43714 NA non-coding upstream 196341 28676824 ~ 28767352 (-)
G43724 NA non-coding upstream 235808 28716291 ~ 28717940 (-)
G43725 NA non-coding upstream 257474 28737957 ~ 28738773 (-)
G43684 NA other downstream 12179 28467312 ~ 28467906 (-)
G43594 NA other downstream 407298 28068213 ~ 28072787 (-)
G43473 NA other downstream 910934 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 1187012 27273229 ~ 27293073 (-)
AMCG00013264 NA other downstream 1922761 26553549 ~ 26557324 (-)
G43869 NA other upstream 772913 29253396 ~ 29254316 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 1445900 29926383 ~ 30028230 (-)
AMCG00013384 NA other upstream 1559722 30040205 ~ 30061634 (-)
AMCG00013386 NA other upstream 1600131 30080614 ~ 30083441 (-)
AMCG00013390 NA other upstream 1685334 30165817 ~ 30184424 (-)

Expression


Co-expression Network