G43691


Basic Information

Item Value
gene id G43691
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28488842 ~ 28491096 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU54463
ccccccacaaacagaaaatgaaaagataaaaacactAGGAACCCTCCAGAGTAACGGGCCGCCACCGGAGCCCAGAGTCCTCCGAGTCAGACGTGATCATTGGTTTAGAAATGTACAGCATGGCGATGCAATCCGAGATTCATCGAAAATGGGGGGAGGaaacaggggtgggggggacgaCATCGCATCTGAttgaacacaaaaaacacacccCTACGACAAAAACCCCAACCCAGGAGACACGGATGAACGACAAACCAGGCCAAAGCCCCCCCATTTTGTGCATAGTTCATGATCCTTTTAAAAccagctatttattttttctaatttgttgcagaaaccaactttttatttttaattattattaatacccgacacaggaagagagagagagagagagagagagagagagagagagagagagagagactgacagacagaaaggAGGAAACGGACAGTAATGCACAATGTTCTCCTGATCAGCGCAGGACAGGGAGCtcatattaagaaaatacaataaagtttAAAACATACAGCCATGGTATGTTCGATCACTgtccatttttttctttttaacaatcAAAAATCAttgatcattttgtttaaaatgtaaagcaatttttttaatatatagatttatatataaagcactcctttttattcattttcgtattttttttcttttaagttcaTTTTGAGTCCATTATTTGGTAAATATGTAACTGCTACGGATTTAGaaacaaaggttttttttttttttcttcttctttttaaatccATAACCTTCAGTGCTTGgagttgggtttttttttttttcgtttttttctcttattattttcataaaaatgtacattaaaatggCGTGGAGTTGGTACTCTGGAACCCTGGCTTTCCTGAGACATTATCcacttttttgtgtgcaagATAGTGAGCAACTTACGTCTTCTTtgacaaaggaaaataaaacaaaaattgaaacatACAGGCTTGATAGTCCATAAAATCAACATCTataacaggagaaaaaaaaatacaatacatcaaCACTGATCGATCCCAGAGTTCTGAAAGTAGCATAATCTTCAttccgattttttttttcataattaaatctGATGGAAGAGTATTtgtccttttttgttgtttttccaacGTTCCCGTAATATTCTTTTCCTCGAACTTCAGAAAAACGAAATGTCTGTAAACGATAGGTGGCCTttgcaaatcaaaaacaaacaaaaaaaacaaacaaaaaacaaatgtaggcaCCTCTGAAATGAGTCTCGTTCATCGAACTCCAGTCCCGACTCGTTTGCTTCTTCACCTCCGGCCAAACGCAACAGAGAGCTCTTGTCCTTCTAAGCAAATCTATGGCCACAGTTCTTcgaaaatccttttttttttgtcttttctgtttttttctgtcttttttttgtccatttttgtattttgttttctgtttataatccgagagaaaaaaaatggtgCAATACTCATAATTATAATCCTTTTTCTTGGATTATTCCACAATAAAAGCCACTATAAGGTAGATAAACATCTTACagattcaggaaaaaaaaaaacacacacaccgttATTTTTTTTCGTTAAGTCCTTGAGTAAACATTTACACGTGAATTGCCCAGGCCTCCCCTCTGTACTTTGTGTCGTCGTGTACGATTAGCTAATTGAGGGGGTGCCGACACTCAGTGCAACGTTAGAAGCtagtaacaacaataacaatatccATCATTATAGATTTTTCTGatgagcaaaaagaaaaattcaaaaaaagaaaacatacttgaaaaaaaataaaatacatatacgtACATCCCAAATGTTCacaaacacacttttgttttaacccacacacactctcatacatacattttgtgcaaACTCACATACAACAGATGTAATTTTTGCCATGttgtagactttttttttttttttttttaaacattttctatatatataagttttgtttttctctatttttttttacttatttcatttcactttgaACTGGTGTCATTGAAAGCTCGGAAGTGTATGAGTgagacaaaataattacaaaaaaaagttcacATTTCATTATTGGCGCTTCTTTTGATtcaagtatttgtattttttattttatttattttttatgtttttgttttgatatgtTTATGATCTTTTATTCTTCtgggagagggatggagagagaaaacaactcaaaaaataaaagagggtGGGGTTGGGGTCGAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54463 True 2255 lncRNA 0.34 1 28488842 28491096

Neighbor

gene id symbol gene type direction distance location
AMCG00013326 nup85,LOC106601803 coding downstream 270784 28210403 ~ 28218058 (-)
AMCG00013325 LOC107724659,LOC107579769 coding downstream 289049 28196957 ~ 28199793 (-)
AMCG00013319 mchr1,LOC103354888,LOC107580882 coding downstream 358710 28128668 ~ 28130132 (-)
AMCG00013318 NA coding downstream 410140 28074541 ~ 28078702 (-)
AMCG00013313 stx8 coding downstream 561515 27917922 ~ 27927327 (-)
AMCG00013331 NA coding upstream 1850 28492946 ~ 28495999 (-)
AMCG00013332 NA coding upstream 10926 28502022 ~ 28521437 (-)
AMCG00013339 nptx1l,LOC107665615,LOC107569544,LOC106601408,LOC103375324 coding upstream 280837 28771933 ~ 28777474 (-)
AMCG00013348 prpsap1,LOC106606986,LOC106533983,LOC108255900,LOC105013149,LOC101163819 coding upstream 483594 28974690 ~ 28989005 (-)
AMCG00013349 LOC105417629 coding upstream 500341 28991437 ~ 28996380 (-)
G43690 NA non-coding downstream 6787 28481732 ~ 28482055 (-)
G43689 LOC107601217,LOC107724432,LOC107698663,LOC107753100 non-coding downstream 8359 28480085 ~ 28480483 (-)
G43688 NA non-coding downstream 11334 28477155 ~ 28477508 (-)
G43687 NA non-coding downstream 12742 28475456 ~ 28476100 (-)
G43686 NA non-coding downstream 13516 28475108 ~ 28475326 (-)
G43714 NA non-coding upstream 185728 28676824 ~ 28767352 (-)
G43724 NA non-coding upstream 225195 28716291 ~ 28717940 (-)
G43725 NA non-coding upstream 246861 28737957 ~ 28738773 (-)
G43834 znf207,LOC107753267 non-coding upstream 624126 29115222 ~ 29117961 (-)
G43831 NA non-coding upstream 628277 29119373 ~ 29121319 (-)
G43684 NA other downstream 20936 28467312 ~ 28467906 (-)
G43594 NA other downstream 416055 28068213 ~ 28072787 (-)
G43473 NA other downstream 919691 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 1195769 27273229 ~ 27293073 (-)
AMCG00013264 NA other downstream 1931518 26553549 ~ 26557324 (-)
G43869 NA other upstream 762300 29253396 ~ 29254316 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 1435287 29926383 ~ 30028230 (-)
AMCG00013384 NA other upstream 1549109 30040205 ~ 30061634 (-)
AMCG00013386 NA other upstream 1589518 30080614 ~ 30083441 (-)
AMCG00013390 NA other upstream 1674721 30165817 ~ 30184424 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G276078 NA non-coding CI01000069 null 5094118 ~ 5096986 (-)
rainbow trout (Oncorhynchus mykiss) LOC118936526 LOC106606576 misc NC_048577.1 CM023231.2 57598591 ~ 57612663 (-)