G43831


Basic Information

Item Value
gene id G43831
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29119373 ~ 29121319 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU54650
TACAAATTACATGAGAGGAGGGGGTAAACACCTCTTAGGCGTTCCAGTCAAATTTCATTGTTGagcaaaaccaattaaaatgatgCAATTAACTGCTCCATTGTTTCTAAATCACAGCTAAGGTTTTAATGAGAGTCTTCAATCTAGAATAGAGGGGAAAGTCTAAGTGATAAAATGTAGGCCATCATGTGGGAAGGGGGAAGAAAATCATCTGTTCAGATTTCACTTTGAGAAGTTTgatggggaaacaaaaaaagtctgCACACATCCCTGGACCTGCGCTACACACACTCTGTACAGGTCATACACTTACATGCACGTACAAACCTTAAGCGACGCGATCCTCCCCGGGTCATGAAAAAACAGCCTCAAGTTTTCATCACGTTTTATTACAAGAAATTTTACAACAGTACAGAAATTAATCACATGTACTACTCTACTCTGTGGCCAAAGATTAAACCTGCAACAAGACCCAATCTGAACTGATGTGTCACAGatgcaaatgtacaaaacaggTCGGGATAACTGTTTGATACCTGAAGCCCTCACCAAGCAAAGTTGGGGACACGAAGTCCAACAGCACCTAAAGTGCTGTGAAGGCCTCATTTTTCAGTAGAGCAATGTAATTACAGAAACTTGCCTTGATAAAGGTGGTACGTTCATGTTACTCCAGCTCCTTCAAAACATTACGAACCACATTTACTAAACTTCACTTCTAAAAACCTAAACGAaacatgagaagaaaaaaaagccacacaGTATCAATTGCAACAACagtttggtgtgtgtttgtttaaataaaaggttatgtaaaacagaaatgtcCCATGCgttgcaatcttttttttttttttttttttttctctcatcatCAAAGGGCAGGTAGACATAGTTATTGGCTTGGCTACTAAAACACCACAAGATGAGAAAAGGTTTAATCTCCAAACCTAGTAAGAGATGGCGTGTCGGCTTCAATAGCGACCTCCCTGAGACATTACAGGAGGTCTCATTCCCATAGGCGGCCGGGGGGGTCCTCCCTGGAATGGAGGGACCATGGGGGGGCCCTGCCCATATGGAGGCATTCCTCCAGGCATAAAACCAGGCATTCCCTGGGGGGGACCTCCATATTGCCCCCCATTGGTCCGACAGGCGGGGCACCCATGTGGGTCTGCCCTGGCCTGGGAATATTCCTCTGGTATTTGGGTAACTGAGCTCTCCTTTCCTCCTAAAGGAGGGAATGGCAAAAAACAGAGAACAGTGTTCAGATACTTTTAATATTCGTAGTATTCCCTTctttaacacaataaaaaaaataaaagcacagtcAAACAAGCACAATACTGgaacaattaacaaaaaacaaaaatacagtccTGTCTaaaaaccaaatcaaaccaCTTAACAACTAACTGGACATTGCATTACTTACTGTTGAATGGCaaagaataaaatgcaagaacTTACCAGCGAGATATCCTCATCAGGGTGGATCAACTTACTAGTTGCACTCGTTGTAGTGAGGGTAGCAGGCTTACTTGTCACAGTAGCTGGTGGTTTGGATACAGTGCTATTAGATGCATTAGTGGTCGAAGCAGTAGACTGAGTATAAGCTGGGAATGTCGGTTTAGGAGGCTCTGAGGACGTTGCAGGTGTGAGAGGTTTGAAATCGGAGCCAACTGGTCCAGACACAGCCTGCTGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54650 True 1701 lncRNA 0.43 2 29119373 29121319

Neighbor

gene id symbol gene type direction distance location
AMCG00013353 NA coding downstream 5326 29098987 ~ 29114047 (-)
AMCG00013347 aanat coding downstream 56133 29061888 ~ 29063240 (-)
AMCG00013349 LOC105417629 coding downstream 122993 28991437 ~ 28996380 (-)
AMCG00013348 prpsap1,LOC106606986,LOC106533983,LOC108255900,LOC105013149,LOC101163819 coding downstream 130368 28974690 ~ 28989005 (-)
AMCG00013339 nptx1l,LOC107665615,LOC107569544,LOC106601408,LOC103375324 coding downstream 341899 28771933 ~ 28777474 (-)
AMCG00013355 NA coding upstream 6152 29127471 ~ 29155513 (-)
AMCG00013354 ern1 coding upstream 39911 29161230 ~ 29173911 (-)
AMCG00013357 NA coding upstream 57009 29178328 ~ 29202068 (-)
AMCG00013358 NA coding upstream 111853 29233172 ~ 29238257 (-)
AMCG00013359 NA coding upstream 161345 29282664 ~ 29304026 (-)
G43834 znf207,LOC107753267 non-coding downstream 1412 29115222 ~ 29117961 (-)
G43714 NA non-coding downstream 352021 28676824 ~ 28767352 (-)
G43725 NA non-coding downstream 380600 28737957 ~ 28738773 (-)
G43724 NA non-coding downstream 401433 28716291 ~ 28717940 (-)
G43691 NA non-coding downstream 628277 28488842 ~ 28491096 (-)
G43919 NA non-coding upstream 376391 29497710 ~ 29499573 (-)
G44086 NA non-coding upstream 967484 30088803 ~ 30090147 (-)
G44230 NA non-coding upstream 1185707 30307026 ~ 30310766 (-)
G44213 NA non-coding upstream 1263367 30384686 ~ 30455606 (-)
G44261 NA non-coding upstream 1412652 30533971 ~ 30539317 (-)
G43684 NA other downstream 651467 28467312 ~ 28467906 (-)
G43594 NA other downstream 1046586 28068213 ~ 28072787 (-)
G43473 NA other downstream 1550222 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 1826300 27273229 ~ 27293073 (-)
AMCG00013264 NA other downstream 2562049 26553549 ~ 26557324 (-)
G43869 NA other upstream 132077 29253396 ~ 29254316 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 805064 29926383 ~ 30028230 (-)
AMCG00013384 NA other upstream 918886 30040205 ~ 30061634 (-)
AMCG00013386 NA other upstream 959295 30080614 ~ 30083441 (-)
AMCG00013390 NA other upstream 1044498 30165817 ~ 30184424 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G153987 NA non-coding NC_053126.1 CM020923.1 11069043 ~ 11073776 (-)