G43853


Basic Information

Item Value
gene id G43853
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29177051 ~ 29178266 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU54679
GTATAGTTTATCTGTCTTCaatcaaatgtgtaatttttgatatacagcaataaaataataagaaacacaAACTCAAGCCAAAACTACAAGACCCACAATGCACTACGCCATCGTTTCGCCGTGCACCCTtggtaaaatgtgaaaagaaaaatacgtcggtaaaataaattaatgctgaacatttttcataatttcagaACTACACATCACATATGCgacttttcatgtatttatttattgttacgaaaatcataataattctGGAAGATCCCGGAAGTACCGCAGCTGTATTTAAGCTCGGCGCTGCGGCGTGGCTCAGTCAGCGTGGTCTGCGGCAGGTCGCTGCCGAGCAATTGCAGGAATTTAAATATGCCGAAGTTAGAGATATGTCACCGTGCAGATTTGATATCAATGAATATGCGATGTTCATTAGGAACGTAATGCAGCTATTTTCCAGGGATGACGAGTTGACGTGAGAGTCGCCGTGCCGGCCACCACGTGGTCAGGGATTGGGTGAGCACTGATCTGTCCGTCCAAAGGGAGACTGGGCCGGAAAGCAGGAGGCGGTTCACTTCGCAACCATTGCAAGGACTGCGAGGAGGACCACTGCCCTGCCCGAGAGGAGGGACATCAGCCCAGCTGCGGGGGAAATGCAACACGATGGATGTGTAATGCAGGGCTAGCGGTGGTCACCTTTTACATGAGAgatgcagtttaattaaaaatgaatgtttaaaaatcaCCTGActcctgtattt
>TU54680
GTATAGTTTATCTGTCTTCaatcaaatgtgtaatttttgatatacagcaataaaataataagaaacacaAACTCAAGCCAAAACTACAAGACCCACAATGCACTACGCCATCGTTTCGCCGTGCACCCTtggtaaaatgtgaaaagaaaaatacgtcggtaaaataaattaatgctgaacatttttcataatttcagaACTACACATCACATATGCgacttttcatgtatttatttattgttacgaaaatcataataattctGGAAGATCCCGGAAGTACCGCAGCTGTATTTAAGCTCGGCGCTGCGGCGTGGCTCAGTCAGCGTGGTCTGCGGCAGGTCGCTGCCGAGCAATTGCAGGAATTTAAATATGCCGAAGTTAGAGATATGTCACCGTGCAGATTTGATATCAATGAATATGCGATGTTCATTAGGAACGTAATGCAGCTATTTTCCAGGGATGACGAGTTGACGTGAGAGTCGCCGTGCCGGCCACCACGTGGTCAGGGATTGGCACTGATCTGTCCGTCCAAAGGGAGACTGGGCCGGAAAGCAGGAGGCGGTTCACTTCGCAACCATTGCAAGGACTGCGAGGAGGACCACTGCCCTGCCCGAGAGGAGGGACATCAGCCCAGCTGCGGGGGAAATGCAACACGATGGATGTGTAATGCAGGGCTAGCGGTGGTCACCTTTTACATGAGAgatgcagtttaattaaaaatgaatgtttaaaaatcaCCTGActcctgtattt
>TU54681
GTATAGTTTATCTGTCTTCaatcaaatgtgtaatttttgatatacagcaataaaataataagaaacacaAACTCAAGCCAAAACTACAAGACCCACAATGCACTACGCCATCGTTTCGCCGTGCACCCTtggtaaaatgtgaaaagaaaaatacgtcggtaaaataaattaatgctgaacatttttcataatttcagaACTACACATCACATATGCgacttttcatgtatttatttattgttacgaaaatcataataattctGGAAGATCCCGGAAGTACCGCAGCTGTATTTAAGCTCGGCGCTGCGGCGTGGCTCAGTCAGCGTGGTCTGCGGCAGGTCGCTGCCGAGCAATTGCAGGAATTTAAATATGCCGAAGTTAGAGATATGTCACCGTGCAGATTTGATATCAATGAATATGCGATGTTCATTAGGAACGTAATGCAGCTATTTTCCAGGGATGACGAGTTGACGTGAGAGTCGCCGTGCCGGCCACCACGTGGTCAGGGATTGGGTGAGGTGAATTACCGGGACTCTTCCTGATTAATAGACCGTGCAAATAAACCgattaaaatgtgcaatttcGGTCAGTGTTTTGCAAATGcctttctcttctctgttcCACAGCACTGATCTGTCCGTCCAAAGGGAGACTGGGCCGGAAAGCAGGAGGCGGTTCACTTCGCAACCATTGCAAGGACTGCGAGGAGGACCACTGCCCTGCCCGAGAGGAGGGACATCAGCCCAGCTGCGGGGGAAATGCAACACGATGGATGTGTAATGCAGGGCTAGCGGTGGTCACCTTTTACATGAGAgatgcagtttaattaaaaatgaatgtttaaaaatcaCCTGActcctgtattt

Function

GO: NA

KEGG:

id description
ko03018 RNA degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU54679 False 758 lncRNA 0.45 4 29177051 29178266
TU54680 False 753 lncRNA 0.45 4 29177051 29178266
TU54681 True 866 lncRNA 0.44 3 29177051 29178266

Neighbor

gene id symbol gene type direction distance location
AMCG00013356 ern1,LOC106601756,LOC106606681 coding upstream 20466 29150242 ~ 29156585 (+)
AMCG00013352 znf207 coding upstream 55616 29115453 ~ 29121435 (+)
AMCG00013351 ube2o coding upstream 85444 29080000 ~ 29091607 (+)
AMCG00013350 NA coding upstream 108649 29067830 ~ 29068402 (+)
AMCG00013344 NA coding upstream 117411 29033142 ~ 29059640 (+)
AMCG00013363 prkca,LOC107664393 coding downstream 390223 29568489 ~ 29573439 (+)
AMCG00013365 LOC108437159,LOC101159746,LOC108259727,LOC103469320,LOC102304961,LOC108239241 coding downstream 407985 29586251 ~ 29627558 (+)
AMCG00013367 cacng4,LOC107548710 coding downstream 519566 29697832 ~ 29710210 (+)
AMCG00013368 NA coding downstream 543379 29721645 ~ 29724010 (+)
AMCG00013366 LOC103141692,LOC104946086,LOC108239284,LOC102237380,LOC107097600 coding downstream 554586 29732852 ~ 29741055 (+)
G43799 NA non-coding upstream 18558 29156699 ~ 29158493 (+)
G43810 NA non-coding upstream 25717 29149978 ~ 29151334 (+)
G43712 NA non-coding upstream 438298 28738123 ~ 28738753 (+)
G43673 NA non-coding upstream 787091 28389689 ~ 28389960 (+)
G43438 NA non-coding upstream 1759264 27270028 ~ 27417787 (+)
G43855 NA non-coding downstream 832 29179098 ~ 29202721 (+)
G43895 NA non-coding downstream 255784 29434050 ~ 29446698 (+)
G44182 NA non-coding downstream 1277406 30455672 ~ 30457671 (+)
G44306 NA non-coding downstream 1556270 30734536 ~ 30734795 (+)
G44307 NA non-coding downstream 1558543 30736809 ~ 30737487 (+)
G43802 NA other upstream 72474 29104289 ~ 29104577 (+)
AMCG00013336 NA other upstream 490913 28676542 ~ 28686138 (+)
G43682 NA other upstream 688268 28484273 ~ 28488783 (+)
AMCG00013317 NA other upstream 1104252 28007514 ~ 28072799 (+)
AMCG00013310 NA other upstream 1241113 27928708 ~ 27935938 (+)
AMCG00013364 cacng5,cacng5b,LOC107586339,LOC107569463,LOC107716884,LOC107688812,LOC107710162,LOC108437158,LOC107710696,LOC107698772 other downstream 462357 29640623 ~ 29667051 (+)
AMCG00013375 bptf,LOC105013188,LOC106607015,LOC103359999 other downstream 707496 29885762 ~ 29928697 (+)
AMCG00013382 NA other downstream 885114 30063380 ~ 30074748 (+)
AMCG00013388 NA other downstream 905378 30083644 ~ 30090117 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other downstream 1040644 30218910 ~ 30229021 (+)

Expression


Co-expression Network