G43919


Basic Information

Item Value
gene id G43919
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29497710 ~ 29499573 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU54758
GCAGAAGACACACTGAGACCACTGGCTGTCAGGAAACAAGAGCAGCAATGTGTATAAAGACATGAGAAGAGAGTCTCTTTACTCTGTGAGGTTTCTTCACCACTCCCTGACCTCACACAGAAGCTTTTTATAGATGAGAAGGagtctcacactctctctcttgccGCCCAAACTTGAAGGCCTTGCAAGAGAACGACTGAACACCGCCCAGGCGGGTGACGCGTGGTGTTTATCTCTCCGATTTGATACTTTGCTGTGAACTTGTGACTCAGCCCACctgagtgaaaaaacaaacacatcataTTTCACAGGCAAAGGGTTTGTCAACCAGCCGGCACCgggaatgaaatgaaattactTCTCTTTTGAGTAATGAGTGTTGTGTTTGCGGCTTTCGTTTTGGGCAATTAATCGAGGCTGTGTCTAACGCAGGTACACTGCCAGGCTCCGAGACTACAGATGGAGTTATCCACGGATATCCATTAGACAACTCGTTGCTCGGCGGAGACAATTAAGGCCTTTGTTTCGGTGCTCGGCTGCCGAACTTGGCGCCGCAGTGAATGAGTGTTTTGAAATACAGAGGCATGCGTTTCCGTTGACAAGATTGAACTATGAAAGTAAATTAGCATACGACGAAAACAACAACACCGCACACCTACGAGGCTCTCAGTCTAGTGCGGCGAGAGCGACTCATTCTTCCCAGGCCTGTGAAGTCTCTCCAGCGACGGCTCTGTGAAAGCGCTCGCATAGCCAACCCTACGCTGGGCCGGTCCTTTCACACGTAAACATCAGAAGGCGGTGGTCATAGAGGAGATGCCTCACCATCATCAGAACCAAaaaaacatcgGCAGACAAACAGGGGGAAGTGCGCACCACTTCTGAGAATATGGGAGAGGTCTCAAGTGGACAAGCACTTCCCTCTGTGGATGTGGTTTCAACACAACCTGCCAGGAATCGTCCTGCTGCTTCATGGATGGGGGGGGTTTCCCATCAGTTTCTTAGCAGAGCTGCACTGTCATTATCCCAGCAGGCCCCAAGCCGGCCCTCCCCACAATGCACTGCCATCGACTCTGGTGGAGAGAGTGCTATATGACTCCGCATGGTGGCCGGGGATCGTTATGCAGTAAAGGCTGTGATGTATCAGGGGTAGATCTTAACTTTTGTTTCCCACTAGCCAGCAGGACTAGTGGCTCTCAAGTTGAAACTTTGTGTGGGCTAGTGCACTAATTAGTGTTTTCGCTAATTCGGATccagtcattattttaatttattgtcagaaaaagaaaattgttgaaaatattgacaaattgtattatttaaaactgtaacaaacatttttcccctaaaaggaataaaaaaatattgtaaatatgtagaTAATGATCTGCTTCTTTGTGCTCacattttgtgtgattttatgTTGTAGATGAGCGAAATTGACCAGTCCACCTTTGCTTGCTTAAAGTACATTGAGTGACAGTGTGAACTGGCTGTAGTTTAAATACTCCCTGCACAGTAGAAAATATGGTGGCAGTGCATTGCATGACTTTGTGATAGAAATAAGCACTGGAACTTTCCTTTGTAATGGATATAGTTGCACGAAATAGCCTGGTAGAAGTATTTCTGTTGGGTGCCTGTGAAAAttcctgtcattttatttgataCAACTGAGTGCATGATTTTCACCTGCTTACTTCTTTGTAAATGGAATGCTTcaagataaaaaaatgtttgaacttAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54758 True 1741 lncRNA 0.45 2 29497710 29499573

Neighbor

gene id symbol gene type direction distance location
AMCG00013361 NA coding downstream 48229 29445941 ~ 29449481 (-)
AMCG00013362 NA coding downstream 51838 29444447 ~ 29445872 (-)
AMCG00013360 LOC106606716,LOC106601764 coding downstream 57240 29439999 ~ 29440470 (-)
AMCG00013359 NA coding downstream 193684 29282664 ~ 29304026 (-)
AMCG00013358 NA coding downstream 259453 29233172 ~ 29238257 (-)
AMCG00013373 LOC106564877 coding upstream 246654 29746227 ~ 29794126 (-)
AMCG00013372 psmd12 coding upstream 297010 29796583 ~ 29803243 (-)
AMCG00013376 LOC107081327 coding upstream 432077 29931650 ~ 29935170 (-)
AMCG00013385 NA coding upstream 491727 29991300 ~ 30002882 (-)
AMCG00013389 rhbdl3 coding upstream 592289 30091862 ~ 30100704 (-)
G43831 NA non-coding downstream 376391 29119373 ~ 29121319 (-)
G43834 znf207,LOC107753267 non-coding downstream 379749 29115222 ~ 29117961 (-)
G43714 NA non-coding downstream 730358 28676824 ~ 28767352 (-)
G43725 NA non-coding downstream 758937 28737957 ~ 28738773 (-)
G43724 NA non-coding downstream 779770 28716291 ~ 28717940 (-)
G44086 NA non-coding upstream 589230 30088803 ~ 30090147 (-)
G44230 NA non-coding upstream 807453 30307026 ~ 30310766 (-)
G44213 NA non-coding upstream 885113 30384686 ~ 30455606 (-)
G44261 NA non-coding upstream 1034398 30533971 ~ 30539317 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding upstream 1040740 30540313 ~ 30562691 (-)
G43869 NA other downstream 243394 29253396 ~ 29254316 (-)
G43684 NA other downstream 1029804 28467312 ~ 28467906 (-)
G43594 NA other downstream 1424923 28068213 ~ 28072787 (-)
G43473 NA other downstream 1928559 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 2204637 27273229 ~ 27293073 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 426810 29926383 ~ 30028230 (-)
AMCG00013384 NA other upstream 540632 30040205 ~ 30061634 (-)
AMCG00013386 NA other upstream 581041 30080614 ~ 30083441 (-)
AMCG00013390 NA other upstream 666244 30165817 ~ 30184424 (-)
AMCG00013405 NA other upstream 787069 30286642 ~ 30290867 (-)

Expression


Co-expression Network