G44213


Basic Information

Item Value
gene id G44213
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30384686 ~ 30455606 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU55124
GCATTTGTACCCTTATAGAAAATACCCcatacacacgcacaaacaTACCGTTTAgagcattaaaaaacacagaaaacactccAGTGCCAAAAGTGGAGGTGAAGTCAGCCATGTTTCTTCCTCAGCGCCAGGCAGCTCTTCGTCCACGTCATGGGCTGGAGGGCTCAGCAAACATGCCTGGGCCCCCAAAAATAACTGAAAGCAAGGTGTGCACCCCCTACTGGAGCACCAGGCACCATCAACCCCTTCATAGAGACCCAGGGTGAGAGTTTACAAAGCTGCCctcttaaatacattattccaaGCCCAACGGTCAGTTTTCCACACTGAAGACACTTCTTGGTCCAACGAGTGGTTTGAAACAAATACACCCTTGAGATCGGAGCAGGTTAGATCTGGCCTTTATCAAAAATGAACCCACATTACAGCGGAAGAGGATGTTCTCTCCTGCCCTGGACGCCCCTCTGCCACAGCGTGAGGACGAGGAGAACGATGAAGAGAAGCCATTCAAACGGCAGAACGACCATCCGTGACAATCgtaaaaattactttttattttaaatagaagaCATCAACATTTTCTATAACTCCTTTATTACAAAATTCACAACTTTGACAAGGTGGCGTTTACAATGTAGTTTCATGACATTTCTTggttttagatttttctctCACTTCCCATcttttccttctccttcccGTCAGGGGCCATCGAAATAAGTTGTGCAAAACAATGCCAGTCGTCCATTCTGAAGCACCATCCGTCCACGTAAGAAACAATGCAAGCAGGTATCCTTAATCTACATCCTCTCCCACAGTCTATCATCATTTAGTCAATCTTTACACAGGTGCACAGCTTTAGCAATTAAAGCAACAGTCGAGAAGAGATTCCTGCTCATCCCGGAGAGTAAATATAACCCGAAGGATCTCGCAGACAAATCCTCCTCAGCTGGTGAAACAAGAGGTTCAGAGAAacgaaggaaaaggaaaaggaggaaCGAACGAGACGCAGCTCAAACCCTCCTCCGGGACGAAAACCGCCATCAATTAGCCCACACCCTGGGGTGCTACTCCTCAACAGCGACCCACTGTGGGCACAGACTGCGGTGGGATTGCTACCTTTCCAGGATCAGTCACCATAATTACTCTAGGAGTAgcggagggaaaaaaaaaaaaaaaaaaaattataacgtttttctttttaaagagtTCATTGATGTCCCAAAAGTCTCCACAGAAGGGGTGCACGACTTCCCAGATTTCCAACACAGAAATTAATTGAGGTACCAGAAACACCAGCGCAGCAGCATGTGTGAACCTCCCGCGTGTGGCAACCTctcatttctttttctcttaAATATGAAGAATGTAATTAATggcagtacattaaaaaaataaaaactgaaaaccgGAAAGTCATGAGGTGGCGTCCACGTCACCGGACCTCGGTGCTGGCCcggcaaaaataaaataccaactCTAGCTCACTGGTACGGTtagaagtaaacaaaacaagtttccATTGGAAATTGTGTAAACAATCGCATGTGTAATAAACACTGTCCGGCATGCGGGGCGACACGGCCAGTTGTCGGTTAGTGTCTGCGGCTCCAACCCGGTGAGAGACCATGGACAGACCACGGCTCCACTCCTTGCATAAAGTGTGAGAGGCTCCTCTGGTCCGGCCGGCGTCTGCAGCCAATTCAGGGCGACCGCTGGGCGAGCCTCCGGCCAGGCAAGGGCCGTGTGTAACACAACAACagcaccacaacacaacacagcacagcaccagtGCACTACGCTGCCGAGAGCCTGTGTCGGCAGAACGTCTATGGTTTACTGCGgaaatctgaaataataataatacgtacGGGTGAGGAAAATAAAACCGTTCAAGTCATCAGAACGCACTGGCGCGAAAACGCTGCATTCAACCGCAAACGCACAACCAACCGACCGCATGTAGgaacgaacaaacaaaaaaaattgccaGCAAGAGTCAACAGAAAAatctttgaatttttttttatgtcggtttgattatttttttgttggtttcatttttttttttttctaggtaaaatatattaatagtaaATGTCTTTCCACACCGGCCCCTGAAGCGACATCTGCGCCACGATGGGCTCGCAGGGAGACGCGCAGCACCGGAAAGGACGAAAGTTGCCATGATTTCAATGTCCCCTGGTTCGTCAGCTGAAGCCCGTTACGATATTTACCGGTGATGTGCAGTCAGTAACTCAGTCACGATtgacagtgtgtttttaaaatacaaagtcaGAAAAGCGATCCTCCCCTCTACGGACCCCCTTGGTTAGTGTATCAATAAACTGATAGAACAACAGGGGGTCTTATGACATCAGAAGACCAGAAAGATCTCGAAAATGGATCCTGCCGCCTGTTCCCTCCCCGCCACCCCCCAACTCATGAACAAGATCCTGTTCCAATGCTGAGCCCCTTCCCCCCCAGGCTGGAGCTCCATGGTGCCGCTGTCTGATCAGTCTGGAGCCCCGCTCTCTGGgtcgctctgtgtgtgtgtgtgtgtgtgtgcgtgtgtatgagGGCAGAGATGACAGAATGACAGCCCCCCACCCCGGAGAGACAGATGAAGTGTTATTTAGGAAGCCGCTGTGCAGAGGGACGGGACTCTACTCTAAAACGAATGAGATGCGGTTAGGGGTCTCCAGCCTCCACCTCCTCCCGGTGGGGGCGCTGGCCAGCGGCGCTGGGCTGGGGGGCGCTGTGCTGTTGTTAGTGATTTTAATGGGTTCAGATTGACAGTAAAGAGGGTTTACCAGCAGactgggcagcagcagcagcccagaGTGGAGCAGCTGGTGGAGCTCAGAGGGGACGTCCTGGGAAATTAACTTCTGAGCAAATACAACAAGAGCAACACGGggaaagaaagtaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaaagaaaaagaaagaaaaagaaagaaggggtGTAAGCTCCAGCACCCTCTTCTGGCCCAGGGCAGATAACAGgtcaaaaattaaataaaaatataagtaCATTTCTCACAATGACCAATCTACAAAGCGTGAGAACGGACTCTATTGTGCGTGTATGCGTTTGCGTGTTCATCGTACTGCACACCACTGTGGGTCTGTCCCCCGGCCCGGTTTCCTTCAGTGGGTAGAGAGTTCTTCACAGGAGTTTATTCTTTACTGCTCCTAGAGAAATAAAAACCTTCAAAAGAGATAGTCTGAGGGTCAGCCGTTTCTTTCCTGATGCTTTTCGAAGCGATTCCGTCTCCCTTTTCTCCACAGCTGACGACACAGACATGCCTTCGCATCGCGACCGCCGTGATGCTGTCGTTTCACCAATTCCTGCTGCTTGACTGGATGTTTTGGCGACGGGTTGTGCGTTTTCCTCAGGGCGCTGCTGGCGGGAGGGCAGTCCTGCCAGGCTGGTGTGTGCCTGCGGGCAGCAGGGCGGTAAGGCAGTGCTGTGGGCCTCCCGGTCTGCCAGTGCAGCGCCAACCACACCAGCCCCCGGCACACGCCCACACCTCccagtcagtgtctgtgtcggtgtgagtgtatgtgcctgtgtccatgtgtgtgtctgtgtgagtgtcagtgtcagtgtcagtgtgagagtgtcTGAGTGTCTGAGAGTGTGCCGCTGCTGCCCCACCTGTTTGAGTCTCTTGACCTCATGCTCGAGCTCCATCTCGCGGGTCCTGGCGTTGAACTCGGACAGGCTAGACGAGGAGCTCCTTCCCCGGCCTGGCCGCTCCGTCTCCAGCTTGAACAGCTGCAGGTGCTCCAGCTCCTTCCGCAGGTCCTCGATCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55124 True 3857 lncRNA 0.50 2 30384686 30455606

Neighbor

gene id symbol gene type direction distance location
AMCG00013403 NA coding downstream 44225 30333448 ~ 30340461 (-)
AMCG00013404 NA coding downstream 51986 30322265 ~ 30332700 (-)
AMCG00013392 NA coding downstream 220208 30155262 ~ 30164478 (-)
AMCG00013393 rhot1a,LOC108430568,LOC107729179 coding downstream 231328 30126697 ~ 30153358 (-)
AMCG00013391 NA coding downstream 258185 30117800 ~ 30126501 (-)
AMCG00013419 NA coding upstream 52345 30507951 ~ 30521671 (-)
AMCG00013420 NA coding upstream 68301 30523907 ~ 30533879 (-)
AMCG00013421 NA coding upstream 168370 30623976 ~ 30635826 (-)
AMCG00013430 LOC104954087 coding upstream 237469 30693075 ~ 30697703 (-)
AMCG00013432 NA coding upstream 242634 30698240 ~ 30700665 (-)
G44230 NA non-coding downstream 73920 30307026 ~ 30310766 (-)
G44086 NA non-coding downstream 294539 30088803 ~ 30090147 (-)
G43919 NA non-coding downstream 885113 29497710 ~ 29499573 (-)
G43831 NA non-coding downstream 1263367 29119373 ~ 29121319 (-)
G43834 znf207,LOC107753267 non-coding downstream 1266725 29115222 ~ 29117961 (-)
G44261 NA non-coding upstream 78365 30533971 ~ 30539317 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding upstream 84707 30540313 ~ 30562691 (-)
G44264 NA non-coding upstream 95783 30551389 ~ 30552050 (-)
G44259 p4hb,LOC107591928 non-coding upstream 98175 30553781 ~ 30599051 (-)
G44330 NA non-coding upstream 316936 30772542 ~ 30774110 (-)
AMCG00013405 NA other downstream 93819 30286642 ~ 30290867 (-)
AMCG00013390 NA other downstream 200262 30165817 ~ 30184424 (-)
AMCG00013386 NA other downstream 301245 30080614 ~ 30083441 (-)
AMCG00013384 NA other downstream 323052 30040205 ~ 30061634 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other downstream 356456 29926383 ~ 30028230 (-)
AMCG00013409 LOC107590438 other upstream 121 30455727 ~ 30464091 (-)
AMCG00013412 NA other upstream 13024 30468630 ~ 30482326 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other upstream 27699 30483305 ~ 30486331 (-)
AMCG00013425 NA other upstream 274681 30730287 ~ 30742643 (-)
G44719 NA other upstream 2110154 32565760 ~ 32567952 (-)

Expression


Co-expression Network