G44230


Basic Information

Item Value
gene id G44230
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30307026 ~ 30310766 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU55141
tgttaaatgtatttatttgacaaattcactcacaaagaaaatacaacgTAAACCATCCAATTCGcaattgtttttacacaaataaataagaaaatagttCTTATTTACAATATGCGTCTGGGTTTGTTCCCAAAACcataaatgattttaaaatactcttaCATTCAGTTTTAGTCTCGCAGTGCAATATTGCAAAAGCAGTGACCGCTTCACTGTCAAAAATCGGGTCATCAGGTGAGAGAAAAACGTGCATTTGAAATCCTGAAAATGGGGCTTTAAAACGCATTCTGCATCCACACTCGGGCTGAAGCCGATGGGAAAAAGCTGGAAGTATTCGATCAAATGCAAAATGCTGCCCCTGGTTTTCCGCTCTTCAAACAGTTCAACTTTACATATATGCCTGCTCTACCAGTCCGTTAAGTATTACATTCAGAAACAACAGGGACTAAATTCGCCTCTGGAATACAAGGCTTAACAATTATACAAGTGTTTGGCGCTCTTGGTTAAGAAGTGGTTCAATATACTCTGGCAGTGCGGACAGTGTTGGAAATTGCGCATTTCAAGAATAAGAAACATTTGTGGCAAAGTATAGAACAGATAATCAGGTTTGAGTTTTAAAGTCAATACCCTCATCTCGGAGTGGTGCTGCTAAACTACGTTATTGGTTGgctacatatttaaataaatagcgctaaatgtatagtattttatttagagGCGTTCAAACAAtccaattttgaaaaaatatattacagccATGTAATGCACTGAGATCCGTGTGCAGACAGGACACCGCTACACTGAAGGTGTCCGGCCTTGACTGATCAAGAGATCTTCTCAGGACAGCAGGCTGGACGCAACGCATAACACCCCCGTATTATTAGACTCTCCAACTATATTCTGTAaaccaaacaatacaatacaaataacagaagATGCCAAGAAATAAACGCATTTtttgaaaccaaataaaaagttttttctAACACAACAATCACTGTGTTCTTACGAAAGTCTCTTTAAACGcattagagtgtgtgtgtaaaccaGTGCTTAAACTAATAAGCGCGACCCTGCAGAGCAATAACACAGCATTAAAactcacataaaaataaaacacctgtaGGAATGAACCTGGTTGTGACTGCAATGTCTCTTCACAGCACAGCGGTCGGGGGTCAGAGACTGTGCTGTGTCTGTCCTGCTGTGAGACCCCACTGACCAGCACATCACAGAGAAAATTAAACACCAACTGACAGCACAATTCATTCATACTGCCGAAAAAGTAAAAAgtgcacaaaaatgtaatattaaaaaacaaaacatgagcAGCGACGGTAATGAACTGAGCGGAGTTTTGCACAATTATATACGAATATATAGAGACAACACCAATAACtaattcacaaaaaatatattaaaataaaagatttctTTATATGTTCAAGTAGGCGCAACACAATGTTGTGTTTAAAGCCACAAATACCACAATCAAGTGAAAACAGTTGCGTGAGAAGAAAACTCACTTTCCTGGTCGTTCACTAATGGGAGTCGTTGTGCGGTTTAACCTCTGACATGAGGTCAACACAAACACCCTGAACGCTACACAACTCTCCCCACCCGGGTCCACAATCCAcccacattaaaaaaactaaacagtaaAGTCCAGGATAATGCGACACACTGTGCGTATTCATGTTTTTAGGACAATTTCTGTCTCCTTAACATCCACTGTCAACTGCGTCTCTCTTCAGCCTCTGCGCAAGGGCGACACCTAGCGGCCGACATGGGCAGCTGCGCATACAGCACAAAGCGAACAGTGACTATCTCTGTAGGGcatgataatattattattaataataataagactaaCATCCAGGATAGGAGGGGCCAGATAGGCGCAGAAGATAATAAAACACGAGCTCTGTGACAGGCAGACAAGCAGGCAGGAAGGGCTGGGCGCAGTCTTTAATCTCCCCTCTCCATCACACACACTGAGgatgcaatacacacacacagcctgccacccacacagatacacaaacacactctcacacacacatactacacaGCCTGTGAACTGCAGAGTATGTCACCGaatcaatgtaaacaaaatcaataatctAAATAAGACTCTGCCGTCCTACCGGTGTGTCATTGAGGGGCATCATCAGCACAGTGAACCCCGTCTGTGTCGTGTTAAGGAAAGTCACATGTGTCACATGTTTTAGGAGTCGAATCTGGGTCAGGGAGGAGTGAAGACACTGCAGTCACTGAAACGCACAAGACAAACCGAACTCACGTTCAGAATGAATGCAGCAGGAAATGTAGGAGcgcatgtttaattaattaattaatgaataacgAGATCATGGGTTTAGCTGCACTACTGCCACCCAACAGTCCACTAGGATGGATCGGAGTAGCCCCGACTCTCTGGCGCCTCTCGGTTTGCAACTGTCTGGCCGACCCAGCCTGACGTGGATCATAGGAGGACGGGAGGCTCTGGCACCGAGCACAGCTTCCACAGAGCCTTCACGTCAGCAGCAGACGATCTGCAGCGGCAACATGCTACAATCAAACTGCAGACATGCCAGCCTTCAGCTGCAAACACGCTGCAAACATGGTAGCCTTCAGCGGCTACTCGCTGCAACGATGCACAACAGGTGACAGACACAGCTCCTGTAATCTGTTGTTCTGTGGCACATCGagcacatagacacacacacacacacacacacagcacctcGATCCGCAGCGCAGTGCCTCAGCCCCCCCCGGTGAGCGTGCTGACCCGGGCAGCGGTGACACTGCGCAGCGGGGGGCCCCGGGGCTAGGTGGGCGGGACCGGCTGGGCCGGGGGGGACCCGGGCTCGTGATCAGAGCCGCTGGAGTTGTCCTCATCGTCCTCGTCGGTCTGCTCGGCGGCACGGTACAGCACCAGCGCCTGGGTCTTGTGCGTGATGGTGACGGTGCACGGGCCCTGCGCCCACGGCTCTCCGTCCACCTGCATGGGCATCCGGGAGCTCTTCAGCACCAGCTGGACCGAGCGGGACAGAGCCGGACACAGCACGTCAGCACAGGGACCTCACTGTCTGCACTGGAGCTACACTgtgtggactggactggactggactggagctACACTATCTGGACTTAACTGGACTgaagCTACACTGTGTGGACTGGACTGGGTTGGGTCTGACTGGTGCGACCCTGTGTGGACCGCACAGTGTCTGTACGCTACAGGTGAGCTGCTAACTTTCTGAAAtcaaaggagggagggagacggaGGGGTAGATGGACTCACCCTGACGGTGTGCGCCTGGCCGAGCCGCACCGGGTTGGCCAGCTTGACCTGGATCTGAGCGCAGTGGAAGGAGCCGAATACACCCACCACCTCCAGCAGCCCGTCATCCAGCCTgggggagacacagagacacagacacccCCGCGTCAAGAGAGTGAGGCAGACAgtcaggcagagagagagagagagagagagaacagaagaaagagcaacaaagaaagacagaaagagagtgGGGAGAAGTGAGAGAGAACAGACGAGGTGCAAGATGAGTGGAGAGCGAGGGTCCCTACCGGGTCGGGGGGCACGGCTCATCCCCCATACCCTCCCACAGCCGGCAGCCTCCGCCCCAATACCCGATGTTCAGCACGATGATGCCCTCCAGGCTGGGCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55141 True 3705 lncRNA 0.48 2 30307026 30310766

Neighbor

gene id symbol gene type direction distance location
AMCG00013392 NA coding downstream 142548 30155262 ~ 30164478 (-)
AMCG00013393 rhot1a,LOC108430568,LOC107729179 coding downstream 153668 30126697 ~ 30153358 (-)
AMCG00013391 NA coding downstream 180525 30117800 ~ 30126501 (-)
AMCG00013389 rhbdl3 coding downstream 206322 30091862 ~ 30100704 (-)
AMCG00013385 NA coding downstream 304144 29991300 ~ 30002882 (-)
AMCG00013404 NA coding upstream 11499 30322265 ~ 30332700 (-)
AMCG00013403 NA coding upstream 22682 30333448 ~ 30340461 (-)
AMCG00013410 NA coding upstream 119898 30430664 ~ 30436741 (-)
AMCG00013419 NA coding upstream 197185 30507951 ~ 30521671 (-)
AMCG00013420 NA coding upstream 213141 30523907 ~ 30533879 (-)
G44086 NA non-coding downstream 216879 30088803 ~ 30090147 (-)
G43919 NA non-coding downstream 807453 29497710 ~ 29499573 (-)
G43831 NA non-coding downstream 1185707 29119373 ~ 29121319 (-)
G43834 znf207,LOC107753267 non-coding downstream 1189065 29115222 ~ 29117961 (-)
G43725 NA non-coding downstream 1568253 28737957 ~ 28738773 (-)
G44213 NA non-coding upstream 73920 30384686 ~ 30455606 (-)
G44261 NA non-coding upstream 223205 30533971 ~ 30539317 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding upstream 229547 30540313 ~ 30562691 (-)
G44264 NA non-coding upstream 240623 30551389 ~ 30552050 (-)
G44259 p4hb,LOC107591928 non-coding upstream 243015 30553781 ~ 30599051 (-)
AMCG00013405 NA other downstream 16159 30286642 ~ 30290867 (-)
AMCG00013390 NA other downstream 122602 30165817 ~ 30184424 (-)
AMCG00013386 NA other downstream 223585 30080614 ~ 30083441 (-)
AMCG00013384 NA other downstream 245392 30040205 ~ 30061634 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other downstream 278796 29926383 ~ 30028230 (-)
G44243 NA other upstream 89121 30399887 ~ 30423025 (-)
AMCG00013409 LOC107590438 other upstream 144961 30455727 ~ 30464091 (-)
AMCG00013412 NA other upstream 157864 30468630 ~ 30482326 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other upstream 172539 30483305 ~ 30486331 (-)
AMCG00013425 NA other upstream 419521 30730287 ~ 30742643 (-)

Expression


Co-expression Network