G44256 (arhgdia,LOC107665665,LOC107654583)


Basic Information

Item Value
gene id G44256
gene name arhgdia,LOC107665665,LOC107654583
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30540313 ~ 30562691 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU55177
NNNNNAACGGTGACGAGACACACGGCTCACACGGATCCCTTGTCGCCGCGGTGATGGGaggctcacacacacacgcacacgcagcGCCGCTCCCTGGACGGCCCCATGTGCATCCGGACCCACACCTGTACAGCAGCAACCCTCCCACTCCCACTGTGACCCCCATTCAGCCCAGCGTCAGGCACGACATCATTGCCAGAGGCACTGGACACAAACATAAGGCATGGACTctgcctgcccccccacccagtcACAGAGAGGATGGATCAGGGCCATGAGGCTCTGGTGTCCCCCCCCACCGCCGGGTCTTGATGACCTCATCGACCAGAGTCCTCTGGGTCAGGAGTCACAGAGCCATTGTCACTGGAGTTCCCAGGCCTGAACCAGTTTGACAGGCAGGTATAAGCCCTGCCCCTCAAGGACCTGACTGCCCAGTCCTGCTGCAGGACCCCCCTACAGTGACAGACCAGACCTCCATTCAACTCCACTCCACGGCACCTCTCAGCCCTGGCCCAGCAGCGCCTGTGTCTGCATGCTCAAAATGGCTTAATTGGAAACTTGGTATAAATTGCTtaaattgttcttgtttttttatcacaGGCAGCACCTGAACTAATTAGTAGAGAATCTGACCATTAACGAGCTGAGTGGACCACGGCAGTGCAACGGGCTGGACTGGACGGTCTGAGACTGCCCCTCCCATCCTCACGGGCATCTGGCTGCAGTTCCCCCCACAAACGCCAGCGAATCCCAGCACCACCCCGGCTCGGCCGCACCTCTGTCACAAAGGTCTCCCTCTTCAAACCCGAACCAGGAGCCCCTGGAAGGCCTcccgtccctccctccctctctccctctccatctgtcttcaattttcctttttctttttaaggcaACATGGTAACAAAGTTctaaccatttaaaataatactcagaagaggggagagagacggggggTTAGGGGCGGGACTGCCCCAGTGAGCTCCACCACTGCCCTGCAGCGGAGACGTCCAGCATGATCAGGACAACCCACAAGGACATGACAGGATGGAGAGAGCGATGGAGAGAGCGATGGAGAGAgcgatggagggagggagagagagagagcccttCTGTCACCCTATCCCCATGCACACTTGCTGTCCTTCACCCTCCTGGGTCTTCCTCTCCCTCGTTCGTATTACTTCGAGATTATTCTAGTTCCTGCCCTTTGATTTCTACACAGGGGCAGTTATAAGGCAGATGAGGGGGTTCAAACCCCAGGAATGAtgagggtcaggggtcaggggttggGTCCTTGGCCACTCAGATCAGCTTCACTCAGATCACACTTCACAAGGCAGACTGGTCGCAATaccagcgagagagagagagggagggagggagtgaaggGGAGATGAGGAAAGGAGATGGGAAGGGAAGGGCGGAGGTGGAGAAGCACTCGACACAGATGGGATGAGAGGTGAATACCAATAACAGCCGGGCCAAAatgtggttttagttttttttttttttttttttcttcgattttatatataaacaaaccaaaaaacaaaaatttggattgtacacttttttctttcctctttccaTTTAGACTTTCACTCTATCTCTGCTCTTATATATATCTCCATTACCTCTGTAAATCTGACTGGTCAGCAGCACCGGGACCTGTCGCTGCTCCTGCTGATTTCTGGGGGTCGGGGACAGGGAGGAGGACGGGGGGCGGGACAGGAAAGgcagtctgtgctgtgtgtccacCACACTGTGCTCAGGACACAGCGGCAGCGCGGCGGACACACAGGACAGCCTGAGGACAGGGAGGTAGAGAGAGCAGGGATTGGCTGGAAGGAAAACCGCACTGGCCTTGGAGCCGTTACAGCAGAGCAGTGAGAGGAGGAGGACGGGGGGAAAGAAAGGCCGAAAGAGACTGGGTAGGGGGGTTTCAGGGGTATCAGGGGACAGGGGTGTCAATCCTTCCAGTCCTTCTTAATGTTGAGGTTCCACTCCCAGGACAGGTGGTTGTGCTTGTCGTCGTCGGTGAACTGGGACTTGATGTTGTAGGTGCCGCGCGCCAGCATGCCCTTGGGCGCCTCTTCCAGCGGCGTGAGGAACTCGTACTCGTCCGGCCGCGGCCCGTAGCTGCCCACCATGTAGTCTGACTTGTCaaTCTTCACTCCTTTCCTGTAGGTCTGCTGGACGTACTTCAGTCCCGAGACGATCTCCTTGTTCACCTTGAAGCTAATCTTGATCTTGTACTCCACTCCCTCCTTCAGAATGAACGACTGCTTCTTAAATTTCTCCAGGTCTccttaaaagagagagag
>TU55180
ttttgtttttttttttttttttttttttttcttcgattttatatataaacaaaccaaaaaacaaaaatttggattgtacacttttttctttcctctttccaTTTAGACTTTCACTCTATCTCTGCTCTTATATATATCTCCATTACCTCTGTAAATCTGACTGGTCAGCAGCACCGGGACCTGTCGCTGCTCCTGCTGATTTCTGGGGGTCGGGGACAGGGAGGAGGACGGGGGGCGGGACAGGAAAGgcagtctgtgctgtgtgtccacCACACTGTGCTCAGGACACAGCGGCAGCGCGGCGGACACACAGGACAGCCTGAGGACAGGGAGGTAGAGAGAGCAGGGATTGGCTGGAAGGAAAACCGCACTGGCCTTGGAGCCGTTACAGCAGAGCAGTGAGAGGAGGAGGACGGGGGGAAAGAAAGGCCGAAAGAGACTGGGTAGGGGGGTTTCAGGGGTATCAGGGGACAGGGGTGTCAATCCTTCCAGTCCTTCTTAATGTTGAGGTTCCACTCCCAGGACAGGTGGTTGTGCTTGTCGTCGTCGGTGAACTGGGACTTGATGTTGTAGGTGCCGCGCGCCAGCATGCCCTTGGGCGCCTCTTCCAGCGGCGTGAGGAACTCGTACTCGTCCGGCCGCGGCCCGTAGCTGCCCACCATGTAGTCTGACTTGTCaactggaggaggagacaggcAAG

Function

symbol description
arhgdia Predicted to enable Rho GDP-dissociation inhibitor activity. Acts upstream of or within small GTPase mediated signal transduction. Predicted to be located in cytoplasm. Predicted to be active in cytosol and membrane. Is expressed in retinal ganglion cell layer. Used to study nephrotic syndrome. Human ortholog(s) of this gene implicated in nephrotic syndrome type 8. Orthologous to human ARHGDIA (Rho GDP dissociation inhibitor alpha).

NR:

description
Rho GDP dissociation inhibitor (GDI) alpha

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55177 True 2327 lncRNA 0.55 3 30540313 30542858
TU55180 False 700 lncRNA 0.53 2 30540668 30562691

Neighbor

gene id symbol gene type direction distance location
AMCG00013420 NA coding downstream 6434 30523907 ~ 30533879 (-)
AMCG00013419 NA coding downstream 18642 30507951 ~ 30521671 (-)
AMCG00013410 NA coding downstream 103572 30430664 ~ 30436741 (-)
AMCG00013403 NA coding downstream 199852 30333448 ~ 30340461 (-)
AMCG00013404 NA coding downstream 207613 30322265 ~ 30332700 (-)
AMCG00013421 NA coding upstream 61285 30623976 ~ 30635826 (-)
AMCG00013430 LOC104954087 coding upstream 130384 30693075 ~ 30697703 (-)
AMCG00013432 NA coding upstream 135549 30698240 ~ 30700665 (-)
AMCG00013427 mrpl12,LOC106606250 coding upstream 140075 30702766 ~ 30705013 (-)
AMCG00013426 hgs coding upstream 148818 30711509 ~ 30723530 (-)
G44261 NA non-coding downstream 996 30533971 ~ 30539317 (-)
G44213 NA non-coding downstream 84707 30384686 ~ 30455606 (-)
G44230 NA non-coding downstream 229547 30307026 ~ 30310766 (-)
G44086 NA non-coding downstream 450166 30088803 ~ 30090147 (-)
G43919 NA non-coding downstream 1040740 29497710 ~ 29499573 (-)
G44330 NA non-coding upstream 209851 30772542 ~ 30774110 (-)
G44381 NA non-coding upstream 362795 30925486 ~ 30931267 (-)
G44382 NA non-coding upstream 369069 30931760 ~ 30935200 (-)
G44384 NA non-coding upstream 374934 30937625 ~ 30937857 (-)
G44420 NA non-coding upstream 484034 31046725 ~ 31047119 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other downstream 53982 30483305 ~ 30486331 (-)
AMCG00013412 NA other downstream 57987 30468630 ~ 30482326 (-)
AMCG00013409 LOC107590438 other downstream 76222 30455727 ~ 30464091 (-)
G44243 NA other downstream 117288 30399887 ~ 30423025 (-)
AMCG00013405 NA other downstream 249446 30286642 ~ 30290867 (-)
AMCG00013425 NA other upstream 167596 30730287 ~ 30742643 (-)
G44719 NA other upstream 2003069 32565760 ~ 32567952 (-)
AMCG00013488 NA other upstream 2059462 32622153 ~ 32627904 (-)
AMCG00013518 NA other upstream 2906158 33468849 ~ 33501747 (-)
G45037 NA other upstream 3115533 33678224 ~ 33678907 (-)

Expression


Co-expression Network