G44259 (p4hb,LOC107591928)


Basic Information

Item Value
gene id G44259
gene name p4hb,LOC107591928
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30553781 ~ 30599051 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU55183
tatgtccgcaattattgtacttaactgtataaattggaagttgtaaaatgtattatatcttgaattgctttgtttaatgtaaatttgaatttgtaatgtttgatgccttgtacttaactgtattcttgcacttggtattgcacttatgttgtaagtcgccctggataagggcatctgccaagaaataaaaaaaaaaataataataaaaaaaaaaaaaatatatatataaatcagcaGGCAGGCTGTCGAGATAACTGGGAAGGGGGTTGGGGTTTGCCAAGTTTTTGTACAGATACAGTATGGCTCCCCACCCCAGAACAGAACTGTCCATCCAAAACAGTGATGGAAACGAGGCTGGGTTTCAAACGACAACCGCTGGCCTTGGAGACGGGGGGCCAGCCTGCTGTGGCGAGTGAAGGGGTCAGCCCCCCCGAGCTGGTCCCACAGGTGGACCCCTTTAGAAGTGAGCTTTAACTGGAAAAAGGGCAATGTGTTAAAAGGGAAATATTCTGCCGGAACAGGAACAGGGCAGTACATCTCCCTCCCCCGCATTGAATTGGAGCCagtaaaggaaagaaaagtccCCGCCCAGGCGCAATGGGGTTAAAATGTACACTTGCACCCAAGACGGTCCTACAAGGGTTGAGGGGAGAGGTGACGCGGGGTTAAATAAAAGTGATAATCGCAGTCTTTTCCGACTCCGTGTTCGGCAGTCGTTGGTTTGGTTCAGTGCcggtgggggtggggtgagggATGGCTGGCTGGTCCAGTCCTGTGGCGCGGGCGGTTTTGAGCAGGTCGGGTTCTGAAAAGGTTAGTGTTGGCGTGACAAGGGCTCAGCGGCGGCACGGGGCCTAGAACTCGTCGTGGCCGGCGTGCTCCCCATCAGAGTCAGAGTCCTCGCCCTCGTCCTCCGTCAGGTCTCCCTCCTCGACGTCCTCCAGGTCATCGTCCTCATCACCGGCTGGCGCCCCTCCATCCTTGCCACCACTCTCCAGGAACTTCGAGAAGCCCTCCAGCGTCCTCTCACCGTTATAATCGATCACTGCGCTCGTCTCCCGCGGGGAAGAACTTGAGCGTGGGGAAGCTGTGCACCTTGACGGCCTCGATCTCGTTGGCCGTGGAGTCCATCTTGGCCACAATGATGCTGTCGCTGTCCTTGTACTTCTCACCCAGCTTGTCCCAGATGGGGGCCAGCTGCTTGCAGTGTCCACACCAGGGGGCATAGAACTCCACGAAGACGTTCTTTTTGGGATCGAAGACTACCTCCTCGAAGTTCTTCCCAACCAGAACATGCACCGGGTTCTTGTCCCAGTCCTCGGGGATGTCCTGGCTCATGAGGTGAGGCTGCGGAGAGACGGATAGAGGGGAATCAGTACACAGCGCCCAGCCAGCAGCCCGGCCCCACGACAGAGACCGCCAGTCGGCTCCTCCGCACCCTCGCGCGCACACACCTTCAGCTTGCCATCCAGGAAGCGCGTGCAGAAGGCGGCGATGTTCTCAGACGTAATCTCATTGATGTCAGGCTTGTACTTGGTCATCTCATCCTCCAGAGTGATGAGCCGCACAGCAGGGCACTCCTCCTTCTTCAGCCCGAAGAACTCCAGGATGCGCTGGTTGTCGTCCAGCTCGCTGTCGATGAAGATGAAGAGGATCTGCCCTTGAAGTCCTCTGCCGCCTTCTTGAAATTGTCCATCTTTACTTTGAAGTCTGAGGCGGCTTTGGGGACGAACAGCAGGATGTGGGACTTTATCTCCCCTCCGAAGATTTTCGGGGCAGTCTGAGG
>TU55184
AATGAAGACGCTTCAGACAGTGCTGgttttaaatcttttatttGGCCACCAGTTGTTTCCACTCAGATTTAGTGTGATGGAATGATTTAGTCTAAGATTCAAAACCCTTTAcctccccccttccctctctcctccttcctccagTCTTCCATTACAttcacacacgcacacacaagcacagccCCCCACCGTCACGCAAAACAGGGGTACACCCAAGCCCCAGTCCCCCAGGGAGGTAGGAGGAGTGTGTCGATCAGGGGAAGCATCCTCGGAGTTACAATAATCGTCTGTCGGTAACCAAGGAGTTCGGCCTGACACCGTGCCGCTGGGCAGGGGGGGAGAGGGGCTGCGGGACACGGTGGACAGACTCGGCCGGAGGAGCACAACTTAAAATCTGAACACTGCAGGGAAGGGGTTAACTGaagtcaatacaaaataaaaaactgtagCCCAAGtttaaatctatatttatatataaaaaaaaatatatatatatataaatcagcaGGCAGGCTGTCGAGATAACTGGGAAGGGGGTTGGGGTTTGCCAAGTTTTTGTACAGATACAGTATGGCTCCCCACCCCAGAACAGAACTGTCCATCCAAAACAGTGATGGAAACGAGGCTGGGTTTCAAACGACAACCGCTGGCCTTGGAGACGGGGGGCCAGCCTGCTGTGGCGAGTGAAGGGGTCAGCCCCCCCGAGCTGGTCCCACAGGTGGACCCCTTTAGAAGTGAGCTTTAACTGGAAAAAGGGCAATGTGTTAAAAGGGAAATATTCTGCCGGAACAGGAACAGGGCAGTACATCTCCCTCCCCCGCATTGAATTGGAGCCagtaaaggaaagaaaagtccCCGCCCAGGCGCAATGGGGTTAAAATGTACACTTGCACCCAAGACGGTCCTACAAGGGTTGAGGGGAGAGGTGACGCGGGGTTAAATAAAAGTGATAATCGCAGTCTTTTCCGACTCCGTGTTCGGCAGTCGTTGGTTTGGTTCAGTGCcggtgggggtggggtgagggATGGCTGGCTGGTCCAGTCCTGTGGCGCGGGCGGTTTTGAGCAGGTCGGGTTCTGAAAAGGTTAGTGTTGGCGTGACAAGGGCTCAGCGGCGGCACGGGGCCTAGAACTCGTCGTGGCCGGCGTGCTCCCCATCAGAGTCAGAGTCCTCGCCCTCGTCCTCCGTCAGGTCTCCCTCCTCGACGTCCTCCAGGTCATCGTCCTCATCACCGGCTGGCGCCCCTCCATCCTTGCCACCACTCTCCAGGAACTTCGAGAAGCCCTCCAGCGTCCTCTCACCGTTATAATCGATCACTGCGCTCGTCTCCCGCGGGGAAGAACTTGAGCGTGGGGAAGCTGTGCACCTTGACGGCCTCGATCTCGTTGGCCGTGGAGTCCATCTTGGCCACAATGATGCTGTCGCTGTCCTTGTACTTCTCACCCAGCTTGTCCCAGATGGGGGCCAGCTGCTTGCAGTGTCCACACCAGGGGGCATctggggggagaggggagaggttACCATGGTGTCAGATCGGCACAGAAGCCAGGGCAGGAGAGGGTCCATGCAGCACCGACAGTTGACAgacagccaatcacagcagtCCTTCACCCCTGGGCACTGAAGCAGTAAATCAGGGTTATGGGGAGAGAACACCATGGTAAAAGGGGTAAAACTAGCCACACGCAAGGGGGCCGGTCTACAGAGAAGACTGTCCCAGAACAACATGGTGCCC

Function

symbol description
p4hb Predicted to enable protein disulfide isomerase activity. Predicted to be involved in protein folding and response to endoplasmic reticulum stress. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in Cole-Carpenter syndrome. Orthologous to several human genes including P4HB (prolyl 4-hydroxylase subunit beta).

NR:

description
protein disulfide-isomerase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55183 True 1786 lncRNA 0.54 6 30553781 30599051
TU55184 False 1735 lncRNA 0.55 4 30554754 30557248

Neighbor

gene id symbol gene type direction distance location
AMCG00013420 NA coding downstream 19902 30523907 ~ 30533879 (-)
AMCG00013419 NA coding downstream 32110 30507951 ~ 30521671 (-)
AMCG00013410 NA coding downstream 117040 30430664 ~ 30436741 (-)
AMCG00013403 NA coding downstream 213320 30333448 ~ 30340461 (-)
AMCG00013404 NA coding downstream 221081 30322265 ~ 30332700 (-)
AMCG00013421 NA coding upstream 24925 30623976 ~ 30635826 (-)
AMCG00013430 LOC104954087 coding upstream 94024 30693075 ~ 30697703 (-)
AMCG00013432 NA coding upstream 99189 30698240 ~ 30700665 (-)
AMCG00013427 mrpl12,LOC106606250 coding upstream 103715 30702766 ~ 30705013 (-)
AMCG00013426 hgs coding upstream 112458 30711509 ~ 30723530 (-)
G44264 NA non-coding downstream 1731 30551389 ~ 30552050 (-)
G44261 NA non-coding downstream 14464 30533971 ~ 30539317 (-)
G44213 NA non-coding downstream 98175 30384686 ~ 30455606 (-)
G44230 NA non-coding downstream 243015 30307026 ~ 30310766 (-)
G44086 NA non-coding downstream 463634 30088803 ~ 30090147 (-)
G44330 NA non-coding upstream 173491 30772542 ~ 30774110 (-)
G44381 NA non-coding upstream 326435 30925486 ~ 30931267 (-)
G44382 NA non-coding upstream 332709 30931760 ~ 30935200 (-)
G44384 NA non-coding upstream 338574 30937625 ~ 30937857 (-)
G44420 NA non-coding upstream 447674 31046725 ~ 31047119 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other downstream 67450 30483305 ~ 30486331 (-)
AMCG00013412 NA other downstream 71455 30468630 ~ 30482326 (-)
AMCG00013409 LOC107590438 other downstream 89690 30455727 ~ 30464091 (-)
G44243 NA other downstream 130756 30399887 ~ 30423025 (-)
AMCG00013405 NA other downstream 262914 30286642 ~ 30290867 (-)
AMCG00013425 NA other upstream 131236 30730287 ~ 30742643 (-)
G44719 NA other upstream 1966709 32565760 ~ 32567952 (-)
AMCG00013488 NA other upstream 2023102 32622153 ~ 32627904 (-)
AMCG00013518 NA other upstream 2869798 33468849 ~ 33501747 (-)
G45037 NA other upstream 3079173 33678224 ~ 33678907 (-)

Expression


Co-expression Network