G44322


Basic Information

Item Value
gene id G44322
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30772381 ~ 30774068 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU55258
GGCTGGTGGAAGTTTGTGGGAGATGTGttggttgggggtgggggggctcagGGCTGGTCTTTCTTCCCCTCTTTTGCAAGGTCAGTCATGTGTTGGCAAAAGGACATAAATCAGTGTATGCTgactttttaaatcatttttgtaCTCCCCTAATTACATACAGCCTACATTATGACCATACATGAAAATTCACTTGAAAAGATATTCAACTCTTTATTGTACATCAATCGATTCTAAACTGCTTCTTACTCAGACAGGACTGCAGCCCTAGTCCTGTAATTTGACACtgaagcgcacacacacacgcatataaaCCATAACTCACACTCCTAGCTCAGAACAATTAGCACTGCAAACAGGAGGCACTTTCACAGCCGCATGCCGCACCGCTGTTCCTGTTTACCTGGCAGATGTAGGTCAGCAGCAGGAGAGGGGACACTGTTTATTATCCTGCACTGTAGACACTGACCCAGTTATGAGAGCGCAGATCCCTCTGGGAAGGGACAGCAAAGAGGCAAGAGTGAGAGGTAAGGTGATGGGGGTTAAACTCCCCTTCAAAGGAAGCTTAGAGGTGGCTGAGAGCTCGAGAGCAGTTCTATAACAGGCACAGGGATGTGGAAAACCTGCTCCGTTTTTTTGGCCAGGGCCCTGTGTGCATGGACAGAGGAGTCAGACGTAAAACCTTTAAATTGgtttttggttattaaaatcaattaaaaacataaaaccacaGAAACACGAGCAGCCAGCCAGCGAGAGGATCTTAAGGTAAACTGCTCTCATCCATTGGCACGGATGGGTACCTCCAAGCTGCGCTAACCGTCCCGGTCCCGGGAGAGACCACCCACCATACTCGGGCCTCACACCCTCTAAATTTAAAGTATCCAGTTAATTGATCTGCAGTGCACTGGACAGGAGGGCGAAGACACACACCAAGAGGTGCAACAGGGAACAAAGTAAATAGGATTCAATTAATGAAGGTGAAAACGAGCAGTGGGCTGAGAGCACTACTCACACACACGGACCGGTCCCCGGGTCAATGGAGCCGCACGTACGAGTCACACCTATAAAGATGTTCAGGTCGAGCTGCACTGGAGATTTGCAGTGTTTCCTCAGAGATGTGAGTGAACATCACGTgaagcccagagagagagagggagagggcgagTAATGCAGTAATTCTGCCCATTAGCTGTAAACTCAAAGGCCGGCACATTGCAGAGCGAGGAAGAGACATGTGACAACTGCAGGAGGGCACTCAACACACCTACACCATCCTCTCTCCattatccacacacacacacacacacacacacacaaacatgcatataCTTAGCccacacaaacagacaactgGACAGTCGATCGTGATGGGCTGCAGGTCCGAGCTCTCGCCCCGCTGCTTTACACACAGAGCTCAGCAGAGTGAcgtgaaaaactaaaatagaacAGAAAAGATAAGACGACCGCGGCTCCCATGTCACGCAGGGCATCGGCTGCAGGTGTGAGCGAGCGAGGGGCATCGCGTGACGGCGGGAGCGTGGTGAAGGGgttgagggagggagagagaggagaggagatcGTGACTTTGGTTCAGTTCAATGTCTGAAAGAGTCTCTATcatcaaaaaggaaaaacaaacaaacagaggcTCCTCTACTACACGCGATGCCGTGTGCCAGGAGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55258 True 1688 lncRNA 0.50 1 30772381 30774068

Neighbor

gene id symbol gene type direction distance location
AMCG00013422 NA coding upstream 8 30770263 ~ 30772373 (+)
AMCG00013423 NA coding upstream 43146 30727085 ~ 30729235 (+)
AMCG00013424 NA coding upstream 61302 30707785 ~ 30711079 (+)
AMCG00013413 ppp1r27,LOC107087444,LOC101068817,LOC107748880,LOC107558871,LOC108242930,LOC101162449 coding upstream 209819 30560481 ~ 30562562 (+)
AMCG00013414 p4hb,LOC107591928 coding upstream 215156 30547643 ~ 30557225 (+)
AMCG00013437 NA coding downstream 85656 30859724 ~ 30871739 (+)
AMCG00013438 NA coding downstream 119364 30893432 ~ 30895656 (+)
AMCG00013439 NA coding downstream 132778 30906846 ~ 30907997 (+)
AMCG00013440 NA coding downstream 166012 30940080 ~ 30949350 (+)
AMCG00013446 vasp,LOC102786205 coding downstream 211404 30985472 ~ 31044736 (+)
G44307 NA non-coding upstream 34894 30736809 ~ 30737487 (+)
G44306 NA non-coding upstream 37586 30734536 ~ 30734795 (+)
G44182 NA non-coding upstream 314710 30455672 ~ 30457671 (+)
G43895 NA non-coding upstream 1325683 29434050 ~ 29446698 (+)
G43855 NA non-coding upstream 1569660 29179098 ~ 29202721 (+)
G44323 NA non-coding downstream 114 30774182 ~ 30774548 (+)
G44379 NA non-coding downstream 148678 30922746 ~ 30934437 (+)
G44380 NA non-coding downstream 150668 30924736 ~ 30926480 (+)
G44383 NA non-coding downstream 161772 30935840 ~ 30936171 (+)
G44388 NA non-coding downstream 192841 30966909 ~ 30970500 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other upstream 204162 30563240 ~ 30568219 (+)
AMCG00013416 alyref,LOC106606979 other upstream 275768 30490827 ~ 30496613 (+)
AMCG00013408 NA other upstream 341732 30425007 ~ 30430649 (+)
AMCG00013399 NA other upstream 428376 30339802 ~ 30344005 (+)
AMCG00013396 tbc1d16,LOC106597465,LOC106606686 other upstream 543360 30218910 ~ 30229021 (+)
G44325 NA other downstream 2783 30776851 ~ 30777169 (+)
AMCG00013468 NA other downstream 1127462 31901530 ~ 31911801 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other downstream 1499200 32273268 ~ 32284951 (+)
AMCG00013477 ppp1r37 other downstream 1619750 32393818 ~ 32400452 (+)
AMCG00013478 NA other downstream 1649208 32423276 ~ 32455686 (+)

Expression


Co-expression Network