G44379


Basic Information

Item Value
gene id G44379
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30922746 ~ 30934437 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU55328
tgaaaattcaGTTCGAGGGATGTGTGTAGCCTTGGCTTGGAGTGAGAGCACATTAAGATACGGTTACCGTTTGATTATGTAGactaattatgaaaatataacaaACATCACAAACGAGTCAAGGCACTTGGTGTGCTTATTCGTTTtagatattaatttatttatgtttgtttcatCTGCTGGATGCCTACGTATTCATTCCAAAGCAGCATTGTTTTCAAGAAGGCCTTGGGATATCCGGGGGCTTTATTAGACCCCCTTGCCCGATAGCAGACGCAGGAGAAGCGGTGGGTTTTTTCTGATGACCCCGGACACATGCTGTACATGCTGGGAAGGGTTGATGGTTTGGGGCGAACACAGATATGAGAGACAAGGGAAAAGAGATGCATATGTACCAGAtttcaaaactacaaaatcTGACTCTCTGGCCAGCTGCCCCACAGAAGAAATCTACATTAAGGggagaaaactaaacaaaggaAAGTAAGAAAAAAGGACTAGAAACAGAGGAATTGGAGTGATGCCTGTTTGAGGATGGATTTTCCGGAAAACAATCTGGGAGTGAGAAGAAAATAGTGACTGGGGGTCAACTTTTCAACTTGAATGTATTATGCACTGCAGACTTTTACGACGCTCTAGAGCAAGAGTTTCAAACTCAGTTCTTAAagggctgcagtgtcttctaGTCTTCATTACAGCAGGGCATTTCAATTACATGATTAAATTTAGTTGTTTTATCAATTAGATATGTTGTTTTAGGTCTTTTACAAGTCATTTTGGCTTTACCTTTAAGCTTGTAGAGAATTATTCAATTCATCCAGACAATCAGTTGattatacaaattacataactGGGAACTGGACAAAACCCAGGAAcaactgagtttgagaccctTACTTTAAAAAGAGGGGGACatgtccttttatttatttttctcctccgTTTTGCCTAGCTTTGTCAGCATGTCTTGCAAGTACGGTGTCCAGCTATTCTGATTTAGCTCCCAGATGGACTTTCATGTTACAACACCTTTGCATAGTGTTATGTAGTCAGAGTATTATATAATCTTATTATACATTAAGGTCTTCAGATTGTGTCCAAAAGCTACAATGATGTATAAGCCTGAgatacttttttactttttgttgttgcattttGCATCTTCACACCAACATTTGAAACCAGGTCTCTAGATGGAAAGGGACAGGtgccatgaaaacaaaatctgttacCTTTCCTTTGGCTTCTATGTGGACAGACCAGGCCAGGCCAGGCTATGTAAATACTAGAGTCCAGAGTTAAAAGCATAGCAGAGACATTCACTAATTTACTTCTCCTTCTCTTTTATTAGTATTCATGCGTGCTGCTAATTCAATTTCTTGactaaaaattaaataaattgtgtttcagGCTAATCAAGAATGTAAGGCATGATTATTTAGGAAATGGAAGTCTTTTATATGGTTTGCTTGTATCCCTGATCCAAagtatgcattttgtaacaAAAGTTCTTACTTTAAGGCAGACCCAAGACACTACATTTTCTTCTCTGTCTTAAtacagttcattttaaatatagacaTCAATTTACAATTgccagttatttatttttatagtgcTACTTATGTGGGAGTGGTAGACAGCTTACACTGCATGCACTGCCAAGCCACCTGCTTCTTATCACACTGCGAATCCAAACCTTTGAACGTTGAActgatgcagctctcactggGAACACTGGAGAGCTCACAGGCACCCCAGTACATGGGTCGCTGTTGTGTAGTAAGCTTAGAAAACTCGATCTGTTGTGTACCATCTCATGGGGCTGGCCTTTCCTGGAATGTCTTTTATACTGCAGAGTTGATCACAGTGAAAGTGACGGCTTCTCCCATCTATTGAGTTCTTAATAGGATGTTTGTATAAAAATAGcaggtttgttttaaaacttgaCTGGATTGCTATTTTTTGTGGCACCACATTGATTTTCTCTTCCtagttgcttttatttttgaataaacaCAATCCAAAGTGTATGAAAGCAGAAGGGTGCTGAAAGGATGCATAGAACTCTCTACCATGTAAGCCTTTACTGTACTCATGCAAAACAACTTATTAACGagccacaaaataataattttgccaTTTTAATCAAGGCTTATATTAGCTGCTTGATAtataatcatttatatataataaaatatgtaaaatgtcagTACTATCAACAATGCATAGAGCaacatcatacattttaaaaagaatggcatgtttttttttaaacacaatgatcacatttattcacacctgtaagtatctcaaaataaaatcctgGAAAAATAATCCTGCATCAGCTTTTTGTAGTCTGGAACTTAACATAAATTGTCTGTTCTAAAGGTCAGGGTATTCTAGGAGGTTCTACACATAATCAATCCTTTAGTTGCATTCATCATCATAGTCAAAGAGTGTTGTCAGAAAATAGCATTGATATTCGATTGGTTGATAGAACAGTAGAATAGAACAATAGAACATTTCCAAAAAGCGGAACTTGCCACTATTGCATTCATCATCAATATGTACAAGGGTACTGAAACACTCACTACCATGAGAAGAAGAGgatgcaagaaaatattaccACTATGTGGTGTGAGAAAAGTGGTTTGGGAGTGTGAATGAGGTGAAATCACCCTACAGCAGAATTTTGCCAAACAGTTGCACAACCTTTCTTCTTTTGAGAAAAACGCATTTCCTTGATTGAACAATATAAAACTATCAGATCTAAAGTTAATattaccaaataaaacaaaacatgttatgTTTCTAAACAATGCTGCTGTTCTTTCcaaaaattgtaacatttataaGCTTTCATTTTCCagttattttcatgtatttttttttttttgtcttgtttgttccTGTCATCCTTTTGCGCAGTTGAAACTTGTCttgcaggaaaaaataaaatgaacccTTTTTCCTGGCATTTTTGCTCGAGTTCCTGGCGTTTTTGCTCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55328 True 3013 lncRNA 0.37 3 30922746 30934437

Neighbor

gene id symbol gene type direction distance location
AMCG00013439 NA coding upstream 14749 30906846 ~ 30907997 (+)
AMCG00013438 NA coding upstream 27090 30893432 ~ 30895656 (+)
AMCG00013437 NA coding upstream 51007 30859724 ~ 30871739 (+)
AMCG00013422 NA coding upstream 150373 30770263 ~ 30772373 (+)
AMCG00013423 NA coding upstream 193511 30727085 ~ 30729235 (+)
AMCG00013440 NA coding downstream 5643 30940080 ~ 30949350 (+)
AMCG00013446 vasp,LOC102786205 coding downstream 51035 30985472 ~ 31044736 (+)
AMCG00013447 NA coding downstream 173205 31107642 ~ 31131214 (+)
AMCG00013451 NA coding downstream 214736 31149173 ~ 31150309 (+)
AMCG00013455 fkrp,LOC107699218,LOC107752280,LOC107566082 coding downstream 422368 31356805 ~ 31358367 (+)
G44323 NA non-coding upstream 148198 30774182 ~ 30774548 (+)
G44322 NA non-coding upstream 148678 30772381 ~ 30774068 (+)
G44307 NA non-coding upstream 185259 30736809 ~ 30737487 (+)
G44306 NA non-coding upstream 187951 30734536 ~ 30734795 (+)
G44182 NA non-coding upstream 465075 30455672 ~ 30457671 (+)
G44383 NA non-coding downstream 1403 30935840 ~ 30936171 (+)
G44388 NA non-coding downstream 32472 30966909 ~ 30970500 (+)
G44433 NA non-coding downstream 164913 31099350 ~ 31106308 (+)
G44468 NA non-coding downstream 369100 31303537 ~ 31310491 (+)
G44486 NA non-coding downstream 434770 31369207 ~ 31371002 (+)
G44325 NA other upstream 145577 30776851 ~ 30777169 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other upstream 354527 30563240 ~ 30568219 (+)
AMCG00013416 alyref,LOC106606979 other upstream 426133 30490827 ~ 30496613 (+)
AMCG00013408 NA other upstream 492097 30425007 ~ 30430649 (+)
AMCG00013399 NA other upstream 578741 30339802 ~ 30344005 (+)
AMCG00013468 NA other downstream 967093 31901530 ~ 31911801 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other downstream 1338831 32273268 ~ 32284951 (+)
AMCG00013477 ppp1r37 other downstream 1459381 32393818 ~ 32400452 (+)
AMCG00013478 NA other downstream 1488839 32423276 ~ 32455686 (+)
G44870 NA other downstream 2171855 33106292 ~ 33106595 (+)

Expression


Co-expression Network