G44382


Basic Information

Item Value
gene id G44382
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30931760 ~ 30935200 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU55332
CACCTGTTGCAGTGGTCTCACCTTGGTCAGGCTGCCAGGAAAGCGCCAAAAAGTTTGCACTGAAAAAGAGCAGTGTCTCAACTCCCAATCTGTAAAGTAAAAACCCTGTGGATAAAGAGGGTTGACAAAGGAACACACAGTAAGtgctctgtggctaccatGCAacgggcgctatacaaataaaaattgattgagaCTGTATCCTGATGATGCTAGACTCTTGGAGATCTCCAGCCATTGCCCTTGGATTTGAGCAAAAACGCCAGGAACTCGAGCAAAAATGCCAGGAAAAAgggttcattttattttttcctgcaaGACAAGTTTCAACTGCGCAAAAGGATGACAggaacaaacaagacaaaaaaaaaaaaatacatgaaaataactGGAAAATGAAAGCttataaatgttacaatttttgGAAAGAACAGCAGCATTGTTTAGAAAcataacatgttttgttttatttggtaatATTAACTTTAGATCTGATAGTTTTATATTGTTCAATCAAGGAAATGCGTTTTTCTCAAAAGAAGAAAGGTTGTGCAACTGTTTGGCAAAATTCTGCTGTAGGGTGATTTCACCTCATTCACACTCCCAAACCACTTTTCTCACACCACATAGTggtaatattttcttgcatcCTCTTCTTCTCATGGTAGTGAGTGTTTCAGTACCCTTGTACATATTGATGATGAATGCAATAGTGGCAAGTTCCGCTTTTTGGAAATGTTCTATTGTTCTATTCTACTGTTCTATCAACCAATCGAATATCAATGCTATTTTCTGACAACACTCTTTGACTATGATGATGAATGCAACTAAAGGATTGATTATGTGTAGAACCTCCTAGAATACCCTGACCTTTAGAACAGACAATTTATGTTAAGTTCCAGACTACAAAAAGCTGATGCAGGATTATTTTTCcaggattttattttgagatacttacaggtgtgaataaatgtgatcattgtgtttaaaaaaaaacatgccattctttttaaaatgtatgatgttGCTCTATGCATTGTTGATAGTActgacattttacatattttattatatataaatgattataTATCAAGCAGCTAATATAAGCCTTGATTAAAAtggcaaaattattattttgtggctCGTTAATAAGTTGTTTTGCATGAGTACAGTAAAGGCTTACATGGTAGAGAGTTCTATGCATCCTTTCAGCACCCTTCTGCTTTCATACACTTTGGATTGtgtttattcaaaaataaaagcaactaGGAAGAGAAAATCAATGTGGTGCCACAAAAAATAGCAATCCAGtcaagttttaaaacaaacctgCTATTTTTATACAAACATCCTATTAAGAACTCAATAGATGGGAGAAGCCGTCACTTTCACTGTGATCAACTCTGCAGTATAAAAGACATTCCAGGAAAGGCCAGCCCCATGAGATGGTACACAACAGATCGAGTTTTCTAAGCTTACTACACAACAGCGACCCATGTACTGGGGTGCCTGTGAGCTCTCCAGTGTTCccagtgagagctgcatcagTTCAACGTTCAAAGGTTTGGATTCGCAGTGTGATAAGAAGCAGGTGGCTTGGCAGTGCATGCAGTGTAAGCTGTCTACCACTCCCACATAAGTAgcactataaaaataaataactggcAATTGTAAATTGAtgtctatatttaaaatgaactgtaTTAAGACAGAGAAGAAAATGTAGTGTCTTGGGTCTGCCTTAAAGTAAGAACTTTtgttacaaaatgcatactTTGGATCAGGGATACAAGCAAACCATATAAAAGACTTCCATTTCCTAAATAATCATGCCTTACATTCTTGATTAGCctgaaacacaatttatttaatttttagtCAAGAAATTGAATTAGCAGCACGCATGAATACTAATAAAAGAGAAGGAGAAGTAAATTAGTGAATGTCTCTGCTATGCTTTTAACTCTGGACTCTAGTATTTACATAGCCTGGCCTGGCCTGGTCTGTCCACATAGAAGCCAAAGGAAAGgtaacagattttgttttcatggcaCCTGTCCCTTTCCATCTAGAGACCTGGTTTCAAATGTTGGTGTGAAGATGCaaaatgcaacaacaaaaagtaaaaaagtatcTCAGGCTTATACATCATTGTAGCTTTTGGACACAATCTGAAGACCTTAATGTATAATAAGATTATATAATACTCTGACTACATAACACTATGCAAAGGTGTTGTAACATGAAAGTCCATCTGGGAGCTAAATCAGAATAGCTGGACACCGTACTTGCAAGACATGCTGACAAAGCTAGGCAAAAcggaggagaaaaataaataaaaggacatGTCCCCCTCTTTTTAAAGTAagggtctcaaactcagttgTTCCTGGGTTTTGTCCAGTTCCCagttatgtaatttgtataatCAACTGATTGTCTGGATGAATTGAATAATTCTCTACAAGCTTAAAGGTAAAGCCAAAATGACTTGTAAAAGACCTAAAACAACATATCTAATTGATAAAACAACTAAATTTAATCATGTAATTGAAATGCCCTGCTGTAATGAAGACtagaagacactgcagccctTTAAGAACTGAGTTTGAAACTCTTGCTCTAGAGCGTCGTAAAAGTCTGCAGTGCATAATACATTCAAGTTGAAAAGTTGACCCCCAGTCACTATTTTCTTCTCACTCCCAGATTGTTTTCCGGAAAATCCATCCTCAAACAGGCATCACTCCAATTCCTCTGTTTCTAGTCCTTTTTTCTTACTTtcctttgtttagttttctccCCTTAATGTAGATTTCTTCTGTGGGGCAGCTGGCCAGAGAGTCAgattttgtagttttgaaaTCTGGTACATATGCATCTCTTTTCCCTTGTCTCTCATATCTGTGTTCGCCCCAAACCATCAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55332 True 2926 lncRNA 0.37 2 30931760 30935200

Neighbor

gene id symbol gene type direction distance location
AMCG00013443 NA coding downstream 18948 30910944 ~ 30912812 (-)
AMCG00013441 NA coding downstream 26497 30896736 ~ 30905263 (-)
AMCG00013444 tbcd coding downstream 43570 30871902 ~ 30888190 (-)
AMCG00013435 NA coding downstream 75645 30850121 ~ 30856115 (-)
AMCG00013433 NA coding downstream 111570 30816609 ~ 30820190 (-)
AMCG00013445 NA coding upstream 22989 30958189 ~ 30976781 (-)
AMCG00013449 NA coding upstream 118613 31053813 ~ 31068895 (-)
AMCG00013448 NA coding upstream 146452 31081652 ~ 31082490 (-)
AMCG00013450 NA coding upstream 160797 31095997 ~ 31096392 (-)
AMCG00013456 NA coding upstream 267113 31202313 ~ 31203338 (-)
G44381 NA non-coding downstream 493 30925486 ~ 30931267 (-)
G44330 NA non-coding downstream 157650 30772542 ~ 30774110 (-)
G44259 p4hb,LOC107591928 non-coding downstream 332709 30553781 ~ 30599051 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding downstream 369069 30540313 ~ 30562691 (-)
G44264 NA non-coding downstream 379710 30551389 ~ 30552050 (-)
G44384 NA non-coding upstream 2425 30937625 ~ 30937857 (-)
G44420 NA non-coding upstream 111525 31046725 ~ 31047119 (-)
G44469 NA non-coding upstream 368329 31303529 ~ 31310495 (-)
G44487 NA non-coding upstream 433981 31369181 ~ 31371002 (-)
G44507 NA non-coding upstream 518851 31454051 ~ 31492508 (-)
AMCG00013425 NA other downstream 189117 30730287 ~ 30742643 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other downstream 445429 30483305 ~ 30486331 (-)
AMCG00013412 NA other downstream 449434 30468630 ~ 30482326 (-)
AMCG00013409 LOC107590438 other downstream 467669 30455727 ~ 30464091 (-)
G44243 NA other downstream 508735 30399887 ~ 30423025 (-)
G44719 NA other upstream 1630560 32565760 ~ 32567952 (-)
AMCG00013488 NA other upstream 1686953 32622153 ~ 32627904 (-)
AMCG00013518 NA other upstream 2533649 33468849 ~ 33501747 (-)
G45037 NA other upstream 2743024 33678224 ~ 33678907 (-)
AMCG00013531 NA other upstream 2757644 33692844 ~ 33699712 (-)

Expression


Co-expression Network