G44388


Basic Information

Item Value
gene id G44388
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30966909 ~ 30970500 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU55343
tacagtgaatcaaaaaaaaaaacaatagcttAACTATTTTTTGAGCCtaactaaacatttaaacaggtCCCTCCCTACACGGATAGCTAATAAATGACACATTAGACAAAAcgcaaataatttaaatctgaGCCTGAAATCAAAGTCCATAAATCCAAAATCAAACTTCTCTACCATTATCAATGTTCCTTTTCTTCTCTCACTCACAATCACTCTCCACACTGCATGtgctcctcctgcctctccccACCAGGGAGCCACCTGCTGTGAGGCTGGGATCCACTCGCATGGGGGACAGCCCATCAGCTGCTCCTCCTGTTCATTTGCCTCCTGAAACTGGAACCCCCCAGGAGGCACTGTCCCTCGCTGGATCCTGGGGGGGTTCACTTTCGGTGCTGCCTGGAATGGCAAGGTACTACTGCAAAGTACTCTACTAAGATTGCTCCTGTAAAAAGCCAAATCTATCACTCACTTATAACTTATCAgccatatacattaataatagtTACAGTAATATTTTGACTAATACTTATCTGTGCTGTAATTATTCAAAGTGTTGATAGAATagaaaatatttagattttttttatttaaatagtagAGTATTAATCGTGTTGCATAGATGGAAAGTTAACAAGTAAATTATtctacagcaaaaaaaaaaaagttatgtttgaaattattttgaagaaataaattgCACTGGTTCTTGTTCACTTATTAGATTAGAGCTGTCTTTTAACATCCattcaatgttaatttaaatgttaaatttaagtTCAAATGAAGGCCTAAGCACCCACATATATTCAGCAGCAGAGATGTATGAGGAAGGTCCTACTGGTaagatttatgattatttttaaaacttaaattacttttgcatcaattacaaataaatatattttactccTGTATGCAACATCATGCTGTTATTACATTCATTATACAATGCATGCACATAAACtgaatggaaaaaacacaaaattgtttCCATATATCAGATCTATATAATTAGGAAACATTCCTGCATGGTATACTCTGCAAAGtttcatattcatttaattaagagGTTTCAATCAATGATGGAAACTTTATTCCttcacatttaaatcaaatgcaaaatagtTTGGTTTGCAAGTGGGGACAGTTTCGCTTTTTATACTGACAGTCAAAAATTAATACTGGTGTGAGACAGTTTCTTACCGATGAGACTTGGTAAGACAGACTGCAGATGcataccatttatttttgtcataatTGTATATATGCATGGAAACCCATTATACATGTGGCCTGTTCAGAAAGCTTGAATTGAGTATGGAAAATCAAATGTATCcaaatgattttttatttttccatgtagCTTCCTAGAACTGAAATACACTTGGTCCAGCAACACACAGTCCTAATATCTATATTATACgcacATTGCTGATGTACATACACATTGCTTCTATGCTGTGTAATTGTTTCAGCAGCCTATGATGCACGGTATAACCTGAAATATGTGGGAAACCTCTTaaattttttttagaaattacaaaacatatgaCAATGATGGTACACAGGAACTTTGCTTTTAAACAAActactttaaattgaaaatgaatttatatTGGGTAGTTCACAACTTTCATGTTGTAGACAAAAAAGCAACCTGTTCTTCTGGCTTAATACATCAGAGACAATTGGTATTTTTGAAACGGCATCAACAAACTGCGTGTTTcaataaattgttaaaaataaaatgtaccttttaCAGTTACCcatgttaatgttttaattattaaatagcatttttaaataaggtGCAAGTATGGCGagtataaaatgtttcaaatattaagtacagaaatgttttgaataattaaaaatataattaatattcaaaAGTTGCAGCCCTACTTATCATATAAAACTAATAAGTGTCTCTGGAGAGGATACATTGTCCAAATATTATACTTACAGCAACTTCAACAATACTCTGAATATCATGCGCATTAGATTCCATCAAATCCTACGTTCTATTAGGTTTCATTCCCCGCCCCCTCCTTCCCCCAGTTTGCTCAAGGTCCACTTTCTGTTTGTCATGGATAGCCGAGTGCTTTTTCAGGCTGCCTGACTCAATGAAAGTCTTCCCGCACTCTCTGCAGCAGTATGGCCGCTCACCTGTGTGAACACGGGAATGCTTCCTCAGGACACACTTGTGCCGGAACATTTTCCCACACTCGCCACATTTGAAGGGCTTCTCCCCCGTGTGGATCTTGCAGTGCTCCTTAAGGCATGAGCGTTGGCTGAATCTTTTGCTGCAGTCAGGGCAGGGATAGAGTCTGAGGCCCGTGTGAACCAGCTGGTGTCTTTTGAGTGTGTGGGACTCCCCAAAGCTCTTCCCGCATTCTGAACAGCGGTGAGGCTTCTCTCCGCTGTGGATGCGTGCATGCCGTTTAAGGTGATGGCCCTTGCTGAAGCTGCTACCACAGATGCCGCAGCAGTATGGCCTATCCCGGTTGCGCTGCTGCTGTTGCCTTTTGTTGAGCTTCCTACTACCATCTGAAGGCTGGTTGGGTGAATCAGCCATATGCATCATCTTATGCTTCTGGAGTTGGAGGCTACTGAAGAAGCAGCCTCCACACTCCACGCACTTGTGGTCAGCCTTCTTTCTGCGTCTGAAACAAGGCTGGGCCATTTCAGGTGTACTAGATTTGGTTAGTGAGACAGGCTGAGAAGGGGATTTTCGCCTTTTCCCTATCCTGAGTGAGCCAGTCTCTTCGCCTTTCCTCTCAGTAGGCATCCCTCCCTTACCTTCCCGGGATTTCTCAATCTGTTTGTTGTGTGGCTTCCTCTCTAGCGATTCAGATTGTGGTGGCTCCAGTTTGTCATGAGTGGTGCTTGCTATATCTCTGCTGTGGACAGATTCCAGTGCAGACTCCCGTTTAATGGAATCCAGCAGTGATGACTCCAGCTTCTCGGCACTAGAAACCGGTTCAGATGCTGCCTTGTGAGAACCAGCGGAGTCAGAATCACTTAACCCCTGTTTGTCTTGAGAAGGACTCACCCAGGAACTCTCCTCTTCAAGGCAGATGTACTCCAAATCTGGGATCTCCAGTTTAATGCAGGCAGATCCCAGAGCAACTGCTTCTTGCTTGGTGAGGAAAGACTCTGTCCTTGTTTCTTGGCCTTCACTCTGCTCACTAATGTTCGGCATATCCTCTGtccttaaaaacaagaatactATCTCTTAGTTCTCTTGCTTTGAAGCTTTCAGATTTTACCATAATATGCTATAACAAGATCAgat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55343 True 3301 lncRNA 0.40 2 30966909 30970500

Neighbor

gene id symbol gene type direction distance location
AMCG00013440 NA coding upstream 17559 30940080 ~ 30949350 (+)
AMCG00013439 NA coding upstream 58912 30906846 ~ 30907997 (+)
AMCG00013438 NA coding upstream 71253 30893432 ~ 30895656 (+)
AMCG00013437 NA coding upstream 95170 30859724 ~ 30871739 (+)
AMCG00013422 NA coding upstream 194536 30770263 ~ 30772373 (+)
AMCG00013446 vasp,LOC102786205 coding downstream 14972 30985472 ~ 31044736 (+)
AMCG00013447 NA coding downstream 137142 31107642 ~ 31131214 (+)
AMCG00013451 NA coding downstream 178673 31149173 ~ 31150309 (+)
AMCG00013455 fkrp,LOC107699218,LOC107752280,LOC107566082 coding downstream 386305 31356805 ~ 31358367 (+)
AMCG00013460 NA coding downstream 494194 31464694 ~ 31465848 (+)
G44383 NA non-coding upstream 30738 30935840 ~ 30936171 (+)
G44379 NA non-coding upstream 32472 30922746 ~ 30934437 (+)
G44380 NA non-coding upstream 40429 30924736 ~ 30926480 (+)
G44323 NA non-coding upstream 192361 30774182 ~ 30774548 (+)
G44322 NA non-coding upstream 192841 30772381 ~ 30774068 (+)
G44433 NA non-coding downstream 128850 31099350 ~ 31106308 (+)
G44468 NA non-coding downstream 333037 31303537 ~ 31310491 (+)
G44486 NA non-coding downstream 398707 31369207 ~ 31371002 (+)
G44529 NA non-coding downstream 676863 31647363 ~ 31665161 (+)
G44549 NA non-coding downstream 814093 31784593 ~ 31871473 (+)
G44325 NA other upstream 189740 30776851 ~ 30777169 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other upstream 398690 30563240 ~ 30568219 (+)
AMCG00013416 alyref,LOC106606979 other upstream 470296 30490827 ~ 30496613 (+)
AMCG00013408 NA other upstream 536260 30425007 ~ 30430649 (+)
AMCG00013399 NA other upstream 622904 30339802 ~ 30344005 (+)
AMCG00013468 NA other downstream 931030 31901530 ~ 31911801 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other downstream 1302768 32273268 ~ 32284951 (+)
AMCG00013477 ppp1r37 other downstream 1423318 32393818 ~ 32400452 (+)
AMCG00013478 NA other downstream 1452776 32423276 ~ 32455686 (+)
G44870 NA other downstream 2135792 33106292 ~ 33106595 (+)

Expression


Co-expression Network