G44420


Basic Information

Item Value
gene id G44420
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31046725 ~ 31047119 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU55378
tttttattttaatgtattgtttttatttaaagcagtggAAGTAAACTCCACAGAGTGACGAGGCACAAACAGAGGTTTGGACAGCAGCACTAGGACCACATTCAAGCTCCAACAAGGAATCAGACCCTTACCAGACACCAAGTACCAGCTGAATAAAGCCTGGAGGCATCACATACACAGAAGgctgagggagaggagagaagcaGCAACTAAAGCTacccccccttggcatttttcctattttgttgcattacaacctgtaatttaaatggatttttatttggacttcatgtaatggacatacacaaaatagtccaaattggtgaagtgaaatggaaaaaataacttgttttaaaaaattcaaaaaatatataaaactgaaaagtggtgcgtgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55378 True 395 lncRNA 0.38 1 31046725 31047119

Neighbor

gene id symbol gene type direction distance location
AMCG00013445 NA coding downstream 69944 30958189 ~ 30976781 (-)
AMCG00013442 NA coding downstream 108554 30914722 ~ 30938171 (-)
AMCG00013443 NA coding downstream 133913 30910944 ~ 30912812 (-)
AMCG00013441 NA coding downstream 141462 30896736 ~ 30905263 (-)
AMCG00013444 tbcd coding downstream 158535 30871902 ~ 30888190 (-)
AMCG00013449 NA coding upstream 6694 31053813 ~ 31068895 (-)
AMCG00013448 NA coding upstream 34533 31081652 ~ 31082490 (-)
AMCG00013450 NA coding upstream 48878 31095997 ~ 31096392 (-)
AMCG00013456 NA coding upstream 155194 31202313 ~ 31203338 (-)
AMCG00013453 prkd2 coding upstream 188034 31235153 ~ 31262580 (-)
G44384 NA non-coding downstream 108868 30937625 ~ 30937857 (-)
G44382 NA non-coding downstream 111525 30931760 ~ 30935200 (-)
G44381 NA non-coding downstream 115458 30925486 ~ 30931267 (-)
G44330 NA non-coding downstream 272615 30772542 ~ 30774110 (-)
G44259 p4hb,LOC107591928 non-coding downstream 447674 30553781 ~ 30599051 (-)
G44469 NA non-coding upstream 256410 31303529 ~ 31310495 (-)
G44487 NA non-coding upstream 322062 31369181 ~ 31371002 (-)
G44507 NA non-coding upstream 406932 31454051 ~ 31492508 (-)
G44519 NA non-coding upstream 459049 31506168 ~ 31506718 (-)
G44528 NA non-coding upstream 598472 31645591 ~ 31646024 (-)
AMCG00013425 NA other downstream 304082 30730287 ~ 30742643 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other downstream 560394 30483305 ~ 30486331 (-)
AMCG00013412 NA other downstream 564399 30468630 ~ 30482326 (-)
AMCG00013409 LOC107590438 other downstream 582634 30455727 ~ 30464091 (-)
G44243 NA other downstream 623700 30399887 ~ 30423025 (-)
G44719 NA other upstream 1518641 32565760 ~ 32567952 (-)
AMCG00013488 NA other upstream 1575034 32622153 ~ 32627904 (-)
AMCG00013518 NA other upstream 2421730 33468849 ~ 33501747 (-)
G45037 NA other upstream 2631105 33678224 ~ 33678907 (-)
AMCG00013531 NA other upstream 2645725 33692844 ~ 33699712 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_03787377_03788902 NA misc CI01000027 null 3787377 ~ 3790279 (-)
striped catfish (Pangasianodon hypophthalmus) G134912 NA non-coding NC_047602.1 CM018548.1 18299067 ~ 18299281 (-)