G44486


Basic Information

Item Value
gene id G44486
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31369207 ~ 31371002 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU55456
CAGAAAATTGGTGTAGAGGTCAGAAGACTCTACAAGAGTGTTGTCCATTTGTGTTCTTTGGCCCCATAGTTTGCACAGCACTTTTACAGCTATGACACAaactctcccacacacacaggaaagCAATACAGGATTTTACAAATAATGCGATGCACAAGACTTAAATCAGACATCACAATACAatagaaacacaacacaggcatCATTTTAAACCTTCCCACCACCGCTTCTCCCAGACTATATGTTACCTTAAATGCAACCAgtgaattatattatattgatctatatctaaaaaaaacaactaaaataaaacataaatacacataacacatttacactgtttaaaaaatatttggacatgAGAGTACCATATATTAATCCTTGTTGGTTTGAATATAACAATCTGGATGGTCGATGGTGGAGGGAATGGGAGGGAAGGTGAGGGGGCTAGGAAAGAACTTACAACAGATAGAAACTTATTTGTTCCGTCTGTCCTCTCTAATATAAAAATCACCCCATTTAATTGTTAAGCTAAACACTTAGTACTGTTTCCAGAGAGGATAGGGGCAGATTTTTAAAGGAGACCCACCAACCCTGTAGGAATGTGACCCTACGTACCAGAGTCTGGCCATCAACAAAACTACACTTCCATCTAGATAAACATTTTTAAGCAGTCTCACTGACAAGTTCATAATCATTATATAACATATACTATATATGATTTTCTCTTTAAACACTTAGTCATACCAATATATTTTTGGCTTTTCCCGCCAAAGCCAACTCCTATTACACTGCAGTTTGGTCCTTTTTTCATTTGACATGGTATACAATTTCTACAAAACAATACAGGGCCAGccattgtgttttaatacaatCTCAGCTTTGAATTAACAAGCTTGCATTAACCAGTTCCCAGTTATGGGCTTGGTTTGGGTCCTACCGTTTTTCATTACCATCTGTTCCTACATTGCTCAAAAATCCTGATGAATGACATTGTGTAGCTTATGCAGAATAAATATTACACAGCTTCAGAGATCAGACAATattacagctttcaaaaatatgtacTTGAATCTCCTAAAATTATGTAATgttgaatgttattttattatagaaaTTATGCCATCTCTCTCATCCTTTAATCTCGCCAATTTCACACTAGGATTTTATAGATGGAAACATTGGAGCACATTTTGGGTTGGAAAGCTTTGGAATTTGATGGAGGTCAATATTGAATTCCCAGCTTTTACCCCAGTGTCACTACACAATAAACTACAATACATATACTATATTGCAAATAGATTTTGCAGGGTAAGTATTGCACAGACACTGAAATAAAGGGATTGATTTCAAAGCTTTCCCACAAACCTCATTGGGGTCACGCTTGGGCGGTGTCATAAAACAACAGAGACCAGAAATAtattatagcctatatatacacacacacacacacacacacaaaataacaatgtaaagatttttaaacaagcagtttaaataaatacaaataagcagAAACAAGAGGGTGCAACTTAAGGGGAGAAATCTAAAACTAGagtacatttaattacagttttcaaCCTAAGTCTCTACTGGCTTCTGCTCTTCTAGGCAAAAGCCCAAAAGTTTTGGCACCAGCCCCAATAGACTTTTCCTCAGTAATTATGTAGGGTTGGTGGTGGGCTTCTGCAACATTCCAATCGCTCCACTTTTAGCCAATGTTATAGACAACTGAATGGTCtacttacactcacctaaaggattattaggaacaccatactaatactgtgtttNNN

Function

GO:

id name namespace
GO:0052547 regulation of peptidase activity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55456 True 1796 lncRNA 0.36 1 31369207 31371002

Neighbor

gene id symbol gene type direction distance location
AMCG00013455 fkrp,LOC107699218,LOC107752280,LOC107566082 coding upstream 10840 31356805 ~ 31358367 (+)
AMCG00013451 NA coding upstream 218898 31149173 ~ 31150309 (+)
AMCG00013447 NA coding upstream 237993 31107642 ~ 31131214 (+)
AMCG00013446 vasp,LOC102786205 coding upstream 324471 30985472 ~ 31044736 (+)
AMCG00013440 NA coding upstream 419857 30940080 ~ 30949350 (+)
AMCG00013460 NA coding downstream 93692 31464694 ~ 31465848 (+)
AMCG00013459 egln2 coding downstream 113540 31484542 ~ 31491406 (+)
AMCG00013458 NA coding downstream 125117 31496119 ~ 31502050 (+)
AMCG00013461 NA coding downstream 245922 31616924 ~ 31641312 (+)
AMCG00013462 ap2s1 coding downstream 371805 31742807 ~ 31753408 (+)
G44468 NA non-coding upstream 58716 31303537 ~ 31310491 (+)
G44433 NA non-coding upstream 262899 31099350 ~ 31106308 (+)
G44388 NA non-coding upstream 398707 30966909 ~ 30970500 (+)
G44383 NA non-coding upstream 433036 30935840 ~ 30936171 (+)
G44379 NA non-coding upstream 434770 30922746 ~ 30934437 (+)
G44529 NA non-coding downstream 276361 31647363 ~ 31665161 (+)
G44549 NA non-coding downstream 413591 31784593 ~ 31871473 (+)
G44561 NA non-coding downstream 527619 31898621 ~ 31899202 (+)
G44581 NA non-coding downstream 659254 32030256 ~ 32030922 (+)
G44590 calm1,LOC102778633,LOC107670363 non-coding downstream 682731 32053733 ~ 32057626 (+)
G44325 NA other upstream 592038 30776851 ~ 30777169 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other upstream 800988 30563240 ~ 30568219 (+)
AMCG00013416 alyref,LOC106606979 other upstream 872594 30490827 ~ 30496613 (+)
AMCG00013408 NA other upstream 938558 30425007 ~ 30430649 (+)
AMCG00013399 NA other upstream 1025202 30339802 ~ 30344005 (+)
AMCG00013468 NA other downstream 530528 31901530 ~ 31911801 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other downstream 902266 32273268 ~ 32284951 (+)
AMCG00013477 ppp1r37 other downstream 1022816 32393818 ~ 32400452 (+)
AMCG00013478 NA other downstream 1052274 32423276 ~ 32455686 (+)
G44870 NA other downstream 1735290 33106292 ~ 33106595 (+)

Expression


Co-expression Network