G44507


Basic Information

Item Value
gene id G44507
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31454051 ~ 31492508 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU55479
TTACAGTTAGTTAAAAAGAACaaccattttattaaatattgcaaaattCAGAAACATTAAGCAAactttttctctccatttaattttctattgcaTCTGAAGAACACCCACAGCGTGCacacaaacatttgtttatctctttctccctctccctctgttgTATTTCCTACAGTAAAGTgcttgtttccttttcttttcattttgtatgaGTTTTacgacgatgatgatgatgatgatgacgtaGGAGCTCCGGCTAGTCTCATGGGCATCTCTGGTGACGTTCGCAATATAAAAGTTGTGCTGTCTATCTTTATCCACCCACCCCAGTCGATTAACATTGTCTTAAACCTTTCTCAGTTGTCATTCCCCTTGAATCaagaattaatgaaaaaaaagccAGGATTTCAAAGGATCTGTCCGCAGGAATCCAGTGAAGCATCTGGCATTAGGGCTAGACAGAGAGAGCATCCACATTTTGATTAGGCATTATGAGGTACCACTCTTAATTGGAGCACCTTCTCACCTTTGATAATAACCAAGACATCAACACTGATCTTACAGATTTTGTAtcctgtttgcattttaaaggcaTTGGAAATAACAAAACTTGAAATTGAACCTTAGGGGCACCAGCTGATAAGGATAATGAACTACGTCAGTTTTCTTTATCAAACAGTTGATGCGAATTCTTAATTTTTCAATGCATCTTAAATTACTAAGGCAGCAGACTCCTGAAATCGGTCACTTCCAGAGTGAAACCAGCTAGACCATAATTGGGCTTAATACAGACACATTTGCACACATATCAACAGAAGCAACAAAGCCATCTCCACTCATGAGTAATGAGAAATGCTTGATCAGGAAACATAGTATTTTCCTACCCAAGTCATTCCTCGGCTCCTTTAACTCTCTAAccccctcaccctctccctACTGCCATCAAGTTGTAGCCCTGTTGACGTGATCCTCATACTGTAggtcaggggttttcaaaccgtttctggagtaccccctgccctgctgTCCCCTGCTCC
>TU55480
TTACAGTTAGTTAAAAAGAACaaccattttattaaatattgcaaaattCAGAAACATTAAGCAAactttttctctccatttaattttctattgcaTCTGAAGAACACCCACAGCGTGCacacaaacatttgtttatctctttctccctctccctctgttgTATTTCCTACAGTAAAGTgcttgtttccttttcttttcattttgtatgaGTTTTacgacgatgatgatgatgatgatgacgtaGGAGCTCCGGCTAGTCTCATGGGCATCTCTGGTGACGTTCGCAATATAAAAGTTGTGCTGTCTATCTTTATCCACCCACCCCAGTCGATTAACATTGTCTTAAACCTTTCTCAGTTGTCATTCCCCTTGAATCaagaattaatgaaaaaaaagccAGGATTTCAAAGGATCTGTCCGCAGGAATCCAGTGAAGCATCTGGCATTAGGGCTAGACAGAGAGAGCATCCACATTTTGATTAGGCATTATGAGGTACCACTCTTAATTGGAGCACCTTCTCACCTTTGATAATAACCAAGACATCAACACTGATCTTACAGATTTTGTAtcctgtttgcattttaaaggcaTTGGAAATAACAAAACTTGAAATTGAACCTTAGGGGCACCAGCTGATAAGGATAATGAACTACGTCAGTTTTCTTTATCAAACAGTTGATGCGAATTCTTAATTTTTCAATGCATCTTAAATTACTAAGGCAGCAGACTCCTGAAATCGGTCACTTCCAGAGTGAAACCAGCTAGACCATAATTGGGCTTAATACAGACACATTTGCACACATATCAACAGAAGCAACAAAGCCATCTCCACTCATGAGTAATGAGAAATGCTTGATCAGGAAACATAGTATTTTCCTACCCAAGTCATTCCTCGGCTCCTTTAACTCTCTAAccccctcaccctctccctACTGCCATCAAGTTGTAGCCCTGTTGACGTGATCCTCATACTGTAggtcaggggttttcaaaccgtttctggagtaccccctgccctgctggtttttgttccaacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55479 False 1034 lncRNA 0.40 2 31454051 31492508
TU55480 True 1038 lncRNA 0.40 2 31461826 31492508

Neighbor

gene id symbol gene type direction distance location
AMCG00013452 LOC101484516 coding downstream 66008 31372000 ~ 31388043 (-)
AMCG00013454 NA coding downstream 100427 31312138 ~ 31353624 (-)
AMCG00013457 NA coding downstream 156640 31294458 ~ 31297411 (-)
AMCG00013453 prkd2 coding downstream 191471 31235153 ~ 31262580 (-)
AMCG00013456 NA coding downstream 250713 31202313 ~ 31203338 (-)
AMCG00013464 arhgap35 coding upstream 174208 31666716 ~ 31672371 (-)
AMCG00013463 arhgap35,LOC107670284 coding upstream 196002 31688510 ~ 31695713 (-)
AMCG00013467 LOC107094172 coding upstream 267748 31760256 ~ 31781607 (-)
AMCG00013466 rhoub,LOC107094179,LOC107746191,LOC107567273,LOC107670325,LOC108278228,LOC107724965 coding upstream 366612 31859120 ~ 31863334 (-)
AMCG00013470 NA coding upstream 377753 31870261 ~ 31891494 (-)
G44487 NA non-coding downstream 83049 31369181 ~ 31371002 (-)
G44469 NA non-coding downstream 143556 31303529 ~ 31310495 (-)
G44420 NA non-coding downstream 406932 31046725 ~ 31047119 (-)
G44384 NA non-coding downstream 516194 30937625 ~ 30937857 (-)
G44382 NA non-coding downstream 518851 30931760 ~ 30935200 (-)
G44519 NA non-coding upstream 13660 31506168 ~ 31506718 (-)
G44528 NA non-coding upstream 153083 31645591 ~ 31646024 (-)
G44538 NA non-coding upstream 247168 31739676 ~ 31739926 (-)
G44583 NA non-coding upstream 495391 31987899 ~ 31988404 (-)
G44584 NA non-coding upstream 495995 31988503 ~ 31989566 (-)
AMCG00013425 NA other downstream 711408 30730287 ~ 30742643 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other downstream 967720 30483305 ~ 30486331 (-)
AMCG00013412 NA other downstream 971725 30468630 ~ 30482326 (-)
AMCG00013409 LOC107590438 other downstream 989960 30455727 ~ 30464091 (-)
G44243 NA other downstream 1031026 30399887 ~ 30423025 (-)
G44719 NA other upstream 1073252 32565760 ~ 32567952 (-)
AMCG00013488 NA other upstream 1129645 32622153 ~ 32627904 (-)
AMCG00013518 NA other upstream 1976341 33468849 ~ 33501747 (-)
G45037 NA other upstream 2185716 33678224 ~ 33678907 (-)
AMCG00013531 NA other upstream 2200336 33692844 ~ 33699712 (-)

Expression


Co-expression Network