G44549


Basic Information

Item Value
gene id G44549
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31784593 ~ 31871473 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU55535
tttcttttgttttgaaaacaataataataatcattataatcattatcatcataatactaataatgacaTTTGGATCAAATCTTAAGACTTAAGTACCATGAGAGCAGGGAGCTCCCAGACTGTCAGTGTCACAGACTGCTGCTGGGAACATCAGTAACAATACCAGTGTCAAGGTCCCCAATGCCACTAGGGGGAACTAAAGTTCTAGAACCAGCACTTCCCTAGCATAGGGTTAATGAGGTAAATTTGCACCAtgatttcacttttaatttggttttctACCTACTATTTTGCCTTGCCTTTCACTATGCTTTGCTATGATGTCCACTGTGCTTGTTTATGATGTTACCTTTATTTGCCACAGTACACACTCCTAACATCTTGACTTACAGCATTTTATCCTAAAAGCTGATTGTGCTAAAGTTTGGTACAGTCCTGGTCTAGTGCAGTAATATATAAAAGAATGGCACATCCATAAGACAGTACAGTGAAAGTAAGGGTAGATCACTAAAAAGGAAGAGGAAGGCCATTGTCAAATGATTATGCAGAGTTATCAGGATAAACGTCTCCTTAAGGGACACTCTCAGAGAACACACACTGAGAGTAAATCACTGGCTATGATTACATGATTGGGGCAAGCTTGCATTGAATTAAGTGGACTGTTAGTAAAAAACATCAGTCATTCAACTCATAGGCATTaaagagtttattattattattttttaaaccattccTTGGTTATTTAGCACTGAAATAACTTCATTATAGAACTGTTAGGTCTATAGTCCTGtggaataatacatttaaatggccAACCTTTTGGGCAAgtaacaaagagagagaaaaaagcattaataataaacagaatttGACTGATTATGCTGTTGATAGAATTGTGTCAGTGGAATGTTCCTCACTGTAAAAGGCCTACGTTGGAGCAGTCCTACAGCGAGAACTCTGCTTCAATATCAAAGTATGCTGTGAAACAGAATTATTTTACCGAGGACACCTTTGGACTGAACTCTTTTCATTCTGTAAGCCTAAAAAGACATGCACCTTGTTGACAAAGCAGTCATCTCCACCTCACTTGAGCCCTGTTGCTAAGCCATTGTCTTGTGAGTATTCCCAGAAACAAGATTAAATCAAGTGCAATCTGAGGTTAGACTCCCTGTGATGCTCAGAGCTGTATAAACTAAACATAAAGCCAATAAATAAGTTTCCAGCAAATATAAACCGCCTGAGCAACTCTATTACTTAGATTTGGGCACAAACCTGGCAGGAAACGTGGTGGTGCCTTGAAAATGTAGAATATGTATTTAGCACTGCCTTGAGGATTAGCATGAACATGATAATCTTGGAAGAGAAACTCTACCTTTGCTATAGAGCTCTTTCAAAGACAGCAGACTACCCAGTTAGTACTTACTTAGGAGTATGAATGGGGCAAGCTTGCACTGATTGCGGCCCCTGCTGTCTCTacaaggtttcttttttttgggtATCTCGACTTTCTCATCTCCTGTGCAGAGGATAGCTTAGGATAAAAGTAAGAAGATCCCAGAGTAGGTAATGTTTCTGAAAGAGATTGAGGGAGGTGGGGGCACAGATCCCTCAAAGGATAGAatagaaacagacacacaaaggtGAAAGACAGACAAGGCCGATAGACCGCACCCCACTGGTCCGGTCCCCTATGCCACAAAGTGTGGAGATTCCCAAGGAGTTTCTTAGTGGAATCAGGGATATGTCCTTAATAATCATTCCAGATTAAAGACCCTTAATCCAATGGTGTGCAACTCCAGTTATAGAGGCCATAATCCAGCAGGTTATGTGTGTCCTGGAATCATTAGCACCTTAATAACTTGGAAATGTGGTTTAATCGTCCAAATTAAGTcaataattagattaattaacgtcgttaagagctcaggtggaatgacaACCTGAGGACTTCGTGCCCCCCAAGACTGAATAAGTCAACATAAATGCACCACAGAGGAGGATCTTGCTGGCCTCAAACTATATAATGAGCTGCTTCCCCTCAACACGTAAATCTGAACTTTATTCTTTTGTACTCCTTGTGAAGGATCACAGTTTTAGAGGTATGTAGGGGAGAGAGGATTACTGTACCTGTGAGTTGATTTATATAAAAGGTTTGGGTTTTTCTAGTGGGGCTACCTGTGATTTGACATGaaagtgtcatttttttttagtttgcttTTAGCTGATATCCTGTATGAATTGAATTGtggaatatgaaaatgtatttatttatttaagatcaCTTAAAGATATACACATTACATGGGACTTTTGAGGCCAAACtccaattatttttttgcagataTTACTTTCAGCTCTGTATATTGtctatatacagaaaataaaagtattataatgAAGAAAATCAGTCAATGGGGATATTAAATCGTCCAGTAAAGTTGAACTATTACAAGTATTTGGTAGAAATGTATAAGAATCACAGTTCATGCACAGACCCATACTATCTGTGCCAGTTGAGTGGAATACATGAATCCTAATCATAACATTACAGAGTCACACTAACCTCTTAGTGAAACTGCTGTAGTACACTCCATTACTGAACCAGCACAGCCAGCTTCAAAAACCAGAAAAGAGCATTagactacaaaaacaaaaaatgattcGAGATCAAAAGCCAACAGACAAGATTCTCACAGTCTCTGCCTGGGGTAGGCCACTGCAGCTCATCTGTTCTGTTCCACTGCTTTACTTTAAACCAATTAGGTCTTCATTCATGATGCAAAGATCACTTAAATGATTAAGGAttagatgggggggggggaaaggctTGGAAATACAGTGGAGAGGAAGTGGCGAAGGCGTCCTCTCTCTGAACTGTACACTCTACAGTCAAAGTTCAGGCATGATGGTGTAGATTAGAGCACTATAGCTGTTTCCACCCTGCTCCATTAGTGCGGATCCAATGAATCCCAGTGACTGGTCATCTTGACATGGTAAAGACCAGTTGTTaaaccacaattaaaaaaatgttggtctacagaaaatgaatgaaacttttgaacagaaGTTTTGGTTTGGGCAAGACTAGTTAGTACCATACTGTATGGAATTAGCTTccaaccctggtcttggagagcTTTAGTTATTCAGATCCTTATATACATCTTCCATTAGTGGCAAAAATATCATGTTAATCTTAAACcaataaattgtttaattatgtaaatgatAAGTAGGTTGGAATGCATAACAGAAGACACTGTAGCTCTCTAGGACCAGGGCCAGAGACCCCCTCCCTCCATGGcatgaaattaaaaccaaattgaaatcaagtgggggtggggttgtCATGAAGCCTCTTAAAtcaatgtgtattttgcatctatttttatttccctaTACATACAaattccacacacacattttgattaattaattctaCAAAGAGGATCTGCTTTGGACACACAAAACATGTGAAATACCAATCTGAAATAAAAGGCTTTCTGAACCCCAAAACTCCACTCTTAACCACCAACTACTGTATTAAATTCATGCCTTACAAGCCCCAATGTCAAATACTAACCCTCCCTTTCAATCCCAATCCTCCTCCCAGCAGGAGCTGCCCCACTCAGACTGTGACACTGACGGACAGGAGCTGCAGATTAAGACTCTGAGGTGGCGATCTGGAGCCCCTGCCCCTGCTCCTGTTCCCCGCACTCTCTTCACTCTTCTTTGGGTTTGGCACTTGGAATTTTTGCCTGGATCCTGTGTAAAAACAAGAGCAACTAAAGA

Function

GO:

id name namespace
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55535 True 3792 lncRNA 0.39 2 31784593 31871473

Neighbor

gene id symbol gene type direction distance location
AMCG00013465 NA coding upstream 11400 31772421 ~ 31773193 (+)
AMCG00013462 ap2s1 coding upstream 31185 31742807 ~ 31753408 (+)
AMCG00013461 NA coding upstream 143281 31616924 ~ 31641312 (+)
AMCG00013458 NA coding upstream 282543 31496119 ~ 31502050 (+)
AMCG00013459 egln2 coding upstream 293187 31484542 ~ 31491406 (+)
AMCG00013469 NA coding downstream 43628 31915101 ~ 31921375 (+)
AMCG00013472 NA coding downstream 117217 31988690 ~ 31990176 (+)
AMCG00013474 NA coding downstream 354698 32226171 ~ 32226557 (+)
AMCG00013479 LOC107735004,LOC107735469 coding downstream 474665 32346138 ~ 32389962 (+)
AMCG00013476 NA coding downstream 592623 32464096 ~ 32475750 (+)
G44529 NA non-coding upstream 119432 31647363 ~ 31665161 (+)
G44486 NA non-coding upstream 413591 31369207 ~ 31371002 (+)
G44468 NA non-coding upstream 474102 31303537 ~ 31310491 (+)
G44433 NA non-coding upstream 678285 31099350 ~ 31106308 (+)
G44388 NA non-coding upstream 814093 30966909 ~ 30970500 (+)
G44561 NA non-coding downstream 27148 31898621 ~ 31899202 (+)
G44581 NA non-coding downstream 158783 32030256 ~ 32030922 (+)
G44590 calm1,LOC102778633,LOC107670363 non-coding downstream 182260 32053733 ~ 32057626 (+)
G44598 NA non-coding downstream 264757 32136230 ~ 32138577 (+)
G44613 NA non-coding downstream 319706 32191179 ~ 32191395 (+)
G44325 NA other upstream 1007424 30776851 ~ 30777169 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other upstream 1216374 30563240 ~ 30568219 (+)
AMCG00013416 alyref,LOC106606979 other upstream 1287980 30490827 ~ 30496613 (+)
AMCG00013408 NA other upstream 1353944 30425007 ~ 30430649 (+)
AMCG00013399 NA other upstream 1440588 30339802 ~ 30344005 (+)
AMCG00013468 NA other downstream 30057 31901530 ~ 31911801 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other downstream 401795 32273268 ~ 32284951 (+)
AMCG00013477 ppp1r37 other downstream 522345 32393818 ~ 32400452 (+)
AMCG00013478 NA other downstream 551803 32423276 ~ 32455686 (+)
G44870 NA other downstream 1234819 33106292 ~ 33106595 (+)

Expression


Co-expression Network