G44590 (calm1,LOC102778633,LOC107670363)


Basic Information

Item Value
gene id G44590
gene name calm1,LOC102778633,LOC107670363
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32053733 ~ 32057626 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU55582
ccatgcCCTGCCAAGCAAGACAAGCTCCTTACCCTTTCATTACCTCAAACACAGGAGCCCCTTTAGACTCCCTTAAGAACATTGAGATAGGAGTAAGAAAGACATTTCAAGagctttaattattgttattgttatttttgcagCAAATAAAAGATGAAAGCTGTTCAAAACCTCATTCTTAACACGCGTCATTCACCAAAAGATCGTTTGCTTATCAAACCCCAATTCCCCAGCAGTTCAGTCATACAACAAGCAGAGCATGGAATAAGTTATGTAGCACTTCTAATACAACATGTGGATCTAACAGCTCAAGACCAGAGCAGAGCCAAAGGAGTAGcagcggcggcagcagcagcaaaatttggtttttctattacattttaagatttcatttttgtacACAAATATTAAGTGCAATtcaaatatctatatatctatagatatcCATCTAGATCTATATAGATATCTATACAGATCTATAAATATCTATACCTTTATATCTATAGATAGAtaactaaatataaatgcacacatacacaatttaCTAAAAGTTGTCTTGCAAAAAACTTGAGGCTCaagatttgatttattatggcacgtttatttcaaaaacaaaagggaaaaagtaAGTCACAGGCCATaccattatattaatattagacAATGCACAAAGTTACAACACTATATTTAATTGcgcacatttaaaaagcattacatttaatttatttttattttgcaaattaagtATTTACAGCAATGCTCTCAGGCTGCCTAATGCCACTACTTTATGTTCTTGAAATGTACCTCTAAAATAACATCAACGCATTGCCTTATACTAGCTTGATGCTGCAATAAGTTCTAAAAGTTACAAAAATcgggaaaagaaaacaaaaacaaaaaaactcagtGCTTTACATTCATTCCATAccctgcttaaaaaaaaaatgaaaataaaaacttttcatCCCACCCCAACCACAATTTGATCTCACTAGCTTGTACCAACTacctgtaatatatattttacaaatatatatatataaacctccTTCTGTACACAAACCGGGATCTCCTTAAACTGTAGGATTAGGCCCCCTACTGTAACAATATCAAACCGCCAGAACAAGTGCATGCAAGGTTTTGTAGTTACTTTCTTTAAAACGGTTCTGGTTTTCTTGCTAGCTGCACGGTTAAATtgttacaaacagaaaatgcttCAATGGTAAGCTGCTCTTGTTCGATGAACAAAAAACTGCCTCTGTCGCTGGATCTGTCTTTTctcaaatcaaatatttgggAATTGGGTTATTTAGAAGAGAGATCTCATGCAGTTAAGATTTCATTTCACACtcctgatttttctttttttctgctgtaattTTGTTGACAGATAGATGTCTTGTTGAATTAGAACcagattacagaatttaaaCAGTAAAGTTTTGTAGCTTTTTTATAGACAGAGTGATCAAAGGAGAACAAGCAATACAAGAAAAAAGCACTTCACTTTGCAGTCATCATTTGCACAaactCTTCATAGTTGACTTGGCCGTCTCCATCGATATCGGCCTCCCGGATCATCTCGTCCACCTCTTCGTCCGTCAGCTTCTCACCCAGGTTGGTCATCACGTGACGCAGTTCAGCTGCGCTGATGTAGCCATTTCCATCCTTATCAAACACTCTGAATGCTTCTCGAATCTCCTCTTCACTGTCCGTGTCTTTCATCTTTCGTGCCATCATGGTTAGGAATTCTGGGAAGTCAATTGTTCCATTGCCTGAAGAATGACAAGAACAGAAAGAAATTCAAGAAAGGTAACTACAACAAAATACACTTCCCGCAAAACTAATTGCAGGTAGAAATACATGCccaaaattaatgaattgattgaaaacaaatttgatCACAAATAGATTACAAGAATGACACTGTTGCCTCCGTGCAGCACAGGAGTCCActtatgccctgtttccactggtaGACACGTCAAGGTTTTCTGGACGCTTTACCATCTTCTGCCAGATGTGGCTTTatcacgcccactaaggaaatactttgttttcagaagTGGAGGCGTGtacttgacttgtagacagacacgGAAGAGAGACATCAGATTAGAGCTCAACCGATAAAGGTTCTTGAGTCTGATACGGATACTGATAATTGGGGAGCAAAATTTCCTGATTACAGATATATCTGCTGATATTGACCGGTTTTATGttaacatgcaaaacagacactttgtagcatggatccctcaaatttTGATCTCAGAGAAAAATGGTGACAAATATGCATtaaaggcaggatttttacatttgaacaaaaaactaaaagttaaCACCAAttatcatcataaataacaaccacaaatcaaactaGTGTTGCATGGTATACCGGTAAAAAGTACCATGGTACTAGAGTTTTGAAAACTGTACCATACaagcatttaaaagaaataaaaagttatatacatacacacacacacacacacacacacacacaca

Function

symbol description
calm1 Enables several functions, including N-terminal myristoylation domain binding activity; enzyme activator activity; and enzyme binding activity. Involved in several processes, including positive regulation of hydrolase activity; regulation of calcium ion transmembrane transport; and regulation of heart contraction. Located in microtubule cytoskeleton and sarcomere. Part of calcium channel complex and catalytic complex. Implicated in catecholaminergic polymorphic ventricular tachycardia 4 and long QT syndrome 14. Biomarker of Alzheimer's disease.

NR:

description
PREDICTED: calmodulin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55582 True 2508 lncRNA 0.36 3 32053733 32057626

Neighbor

gene id symbol gene type direction distance location
AMCG00013472 NA coding upstream 63557 31988690 ~ 31990176 (+)
AMCG00013469 NA coding upstream 132358 31915101 ~ 31921375 (+)
AMCG00013465 NA coding upstream 280540 31772421 ~ 31773193 (+)
AMCG00013462 ap2s1 coding upstream 300325 31742807 ~ 31753408 (+)
AMCG00013461 NA coding upstream 412421 31616924 ~ 31641312 (+)
AMCG00013474 NA coding downstream 168545 32226171 ~ 32226557 (+)
AMCG00013479 LOC107735004,LOC107735469 coding downstream 288512 32346138 ~ 32389962 (+)
AMCG00013476 NA coding downstream 406470 32464096 ~ 32475750 (+)
AMCG00013481 NA coding downstream 432445 32490071 ~ 32494429 (+)
AMCG00013485 NA coding downstream 532102 32589728 ~ 32599218 (+)
G44581 NA non-coding upstream 22811 32030256 ~ 32030922 (+)
G44561 NA non-coding upstream 154531 31898621 ~ 31899202 (+)
G44549 NA non-coding upstream 182260 31784593 ~ 31871473 (+)
G44529 NA non-coding upstream 388572 31647363 ~ 31665161 (+)
G44486 NA non-coding upstream 682731 31369207 ~ 31371002 (+)
G44598 NA non-coding downstream 78604 32136230 ~ 32138577 (+)
G44613 NA non-coding downstream 133553 32191179 ~ 32191395 (+)
G44620 NA non-coding downstream 228388 32286014 ~ 32286159 (+)
G44702 NA non-coding downstream 485009 32542635 ~ 32543676 (+)
G44747 NA non-coding downstream 597877 32655503 ~ 32655702 (+)
AMCG00013468 NA other upstream 141932 31901530 ~ 31911801 (+)
G44325 NA other upstream 1276564 30776851 ~ 30777169 (+)
AMCG00013417 mcrip1,LOC106601427,LOC106606980 other upstream 1485514 30563240 ~ 30568219 (+)
AMCG00013416 alyref,LOC106606979 other upstream 1557120 30490827 ~ 30496613 (+)
AMCG00013408 NA other upstream 1623084 30425007 ~ 30430649 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other downstream 215642 32273268 ~ 32284951 (+)
AMCG00013477 ppp1r37 other downstream 336192 32393818 ~ 32400452 (+)
AMCG00013478 NA other downstream 365650 32423276 ~ 32455686 (+)
G44870 NA other downstream 1048666 33106292 ~ 33106595 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other downstream 1318894 33376520 ~ 33412841 (+)

Expression


Co-expression Network