G44623


Basic Information

Item Value
gene id G44623
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32285055 ~ 32285978 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU55626
aaaataaatatatagtaatatgTATTGCCACAAAGACATTATGGAAAACAGATGCTGCAATAGTATATACAAAAAAGAGTGATAAAAAAcagtcattacaaattaaacttcATTAAGAAGTGCTCTGTCCATAGTATTGTTctctttaaatatgaatgtccATATGTCATTATATCAGTTTTTGACATCATGTACATGGTATACATATTGAATCACTGTACAGTCTATCCCATAACAACCAGTAGAAATAACCTTGTagagatgcaaaaaaaaaaaaaaaacatcctttaagatttatttaacaGAAGCTGTAGTTACTGTGGAAATGGAGCATATTTCCTTACCAAAGTATACAGGCTGTCTGAAGAATCACTTTACAGTGGGAAATTGTAAGACATTCTACAGTGGCACACAATTCAATAATTCAACCATGTGATGAATTCCAAATTTGAACTATTCAGTCTGAAATGTTCCTACAATTTCTGTGGATTTTGATGGAGGAAGCTTTTCATTAACAAACAGCATCTTCAGAGATTGAAATCAAAACTGTCTGatacatattaatttaagaATGTATGGAATGTATCTAAGACATTCAACCCACCACTGCATCATCCACAATCTgtaactattgtttttttttttagtttagtttaattttgtttttcactttgatgtTCTAATGTTCACCATAAAATCATATTGGTACCTGGTGAACAGCAGAAAGCTTTAGTGTTTCTGAATGCCCTTATTACCTCTGTACTATATTAGGCtttctcaaaattatttttaattgtaattaattatggAAAGGCTGTTGTTAAGAACagctgtttaaattaattactggACTTTTCAGTGTGTATTTTAAGCTTCTCCTTAAGGAAACAGCATAGTGATATTCACtggtaatttaaataatta

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0015849 organic acid transport biological_process
GO:0055006 cardiac cell development biological_process
GO:0055011 atrial cardiac muscle cell differentiation biological_process
GO:1905039 carboxylic acid transmembrane transport biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0098656 anion transmembrane transport biological_process
GO:0046942 carboxylic acid transport biological_process
GO:1903825 organic acid transmembrane transport biological_process
GO:0015711 organic anion transport biological_process
GO:1990542 mitochondrial transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0006839 mitochondrial transport biological_process
GO:0006848 pyruvate transport biological_process
GO:0006850 mitochondrial pyruvate transmembrane transport biological_process
GO:1901475 pyruvate transmembrane transport biological_process
GO:0009055 electron transfer activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU55626 True 924 lncRNA 0.30 1 32285055 32285978

Neighbor

gene id symbol gene type direction distance location
AMCG00013475 NA coding downstream 168728 32101568 ~ 32116327 (-)
AMCG00013471 LOC107670363,LOC107708400 coding downstream 219157 32054636 ~ 32065898 (-)
AMCG00013470 NA coding downstream 393561 31870261 ~ 31891494 (-)
AMCG00013466 rhoub,LOC107094179,LOC107746191,LOC107567273,LOC107670325,LOC108278228,LOC107724965 coding downstream 421721 31859120 ~ 31863334 (-)
AMCG00013467 LOC107094172 coding downstream 503448 31760256 ~ 31781607 (-)
AMCG00013480 NA coding upstream 122395 32408373 ~ 32411868 (-)
AMCG00013482 NA coding upstream 235672 32521650 ~ 32539826 (-)
AMCG00013484 clptm1,LOC107582636 coding upstream 259199 32545177 ~ 32565354 (-)
AMCG00013483 NA coding upstream 286448 32572426 ~ 32581303 (-)
AMCG00013489 NA coding upstream 323903 32609881 ~ 32620938 (-)
G44615 NA non-coding downstream 91590 32193227 ~ 32193465 (-)
G44612 NA non-coding downstream 99253 32185538 ~ 32185802 (-)
G44597 NA non-coding downstream 208552 32075220 ~ 32076503 (-)
G44587 NA non-coding downstream 254117 32027935 ~ 32030938 (-)
G44584 NA non-coding downstream 295489 31988503 ~ 31989566 (-)
G44651 NA non-coding upstream 30202 32316180 ~ 32383930 (-)
G44668 NA non-coding upstream 147310 32433288 ~ 32441371 (-)
G44703 NA non-coding upstream 256670 32542648 ~ 32543677 (-)
G44748 NA non-coding upstream 369547 32655525 ~ 32655725 (-)
G44749 LOC105030512,LOC106609167,LOC106584099 non-coding upstream 370727 32656705 ~ 32657232 (-)
AMCG00013425 NA other downstream 1542412 30730287 ~ 30742643 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other downstream 1798724 30483305 ~ 30486331 (-)
AMCG00013412 NA other downstream 1802729 30468630 ~ 30482326 (-)
AMCG00013409 LOC107590438 other downstream 1820964 30455727 ~ 30464091 (-)
G44243 NA other downstream 1862030 30399887 ~ 30423025 (-)
G44719 NA other upstream 279782 32565760 ~ 32567952 (-)
AMCG00013488 NA other upstream 336175 32622153 ~ 32627904 (-)
AMCG00013518 NA other upstream 1182871 33468849 ~ 33501747 (-)
G45037 NA other upstream 1392246 33678224 ~ 33678907 (-)
AMCG00013531 NA other upstream 1406866 33692844 ~ 33699712 (-)

Expression


Co-expression Network