G44815 (clasrp,LOC102789808)


Basic Information

Item Value
gene id G44815
gene name clasrp,LOC102789808
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32934067 ~ 32938173 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU55871
GTTTGTAGGGATCATAGGTGGGGCTGTCTCTCCTCGCGTAGCTGAAATTCAAATATGGGAATGGGAGGGACgggtagaaaaaataaaataaaataaaaaaaatgtaatctcacATGGAGGAACTGCACTGGCATAAGCCAAACAAATGACACTGATAACAGCTCAATCCTAGTAGTTGGCTAATGTAGTTAACTTCCCTATAATTAAAGCCTCCACAGACAGAAGACACCACTGATTTTTACACAGAAACGTGTTAAACTGGGGTCCCACTGACCTGCtagttccaactgagctctgtggaacagaaattaaattttGAACAGGCAAAATTGTAAAGCTCAAAAGCTGAACAGTGTGACCATTGCAACTTTTGACTCAGTTTAGCAATATTGGCATACAGGAACCTAGGGTGATTCCTTGTATGAGAGTTGGAGGCAGTGCAGCAGACCAGGAATCATGAGGTTGGTCCTGTGAAGTCTGAGCAGAGTTGGGTGTATGGTGTGTGTACATCTATATGTTGTATCGCTAACCATCGAAGCCCGTCAACTGTTTTGCGGAGCACCTCGGTCCGAGAGCTTCTCATCAGCATCTCcagatttaaaatcaattgcCTTCATTCGCATTTCATACTTCATTATTCTTATTGCCTTGGTTTTTGCTTTGAAAGAACAGTGCCTCAAGGGCGAAGCTGTAACTGTTCCATGTAGAAACCATACAATCCTGGACTATTAAGAAGTGATCTGAACGTCTCTAACTCTATCCACCAACAGCAGGCCTGAACCGAGGATGAAGTTGGGAGTGTCCAGTGTGCGTGTTCCCTCGGGCCAGCTGTGCGACCTGTGCTCCCAGGACGGGGGTTACCTGGGTGGGCTGATCTGTCTCCCCTTTAGCCTTTTCTCTCTGAACTCCCTCCTCTGTCTCCGTGAGCGCCGGCCCGAGTACATGGCCTTCTCCTCCTCTAGGGCCTTGGCATGCTTTATGGCCTCAGCCTCCTCCTTGTCCTTCCTCAGCATCCTGACAAAGTCTCCCTCTGCCATGCCATAGGGCGTGGCCATCTTGTTCAAGTCCTGAACCTGCTCTGTATTCAACTCGTCCACATCCACCTCCACATCAATGTCAGGAATGACCCCGTCCTCGTCGCTCTCGCTGTTTTCG

Function

symbol description
clasrp Orthologous to human CLASRP (CLK4 associating serine/arginine rich protein).

NR:

description
PREDICTED: CLK4-associating serine/arginine rich protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55871 True 1155 lncRNA 0.48 4 32934067 32938173

Neighbor

gene id symbol gene type direction distance location
AMCG00013496 NA coding downstream 97469 32833847 ~ 32836598 (-)
AMCG00013489 NA coding downstream 313129 32609881 ~ 32620938 (-)
AMCG00013483 NA coding downstream 352764 32572426 ~ 32581303 (-)
AMCG00013484 clptm1,LOC107582636 coding downstream 368713 32545177 ~ 32565354 (-)
AMCG00013482 NA coding downstream 394241 32521650 ~ 32539826 (-)
AMCG00013507 NA coding upstream 158466 33096639 ~ 33108496 (-)
AMCG00013508 map3k10,LOC102787573,LOC107756783 coding upstream 183799 33121972 ~ 33122871 (-)
AMCG00013506 NA coding upstream 191881 33130054 ~ 33143388 (-)
AMCG00013511 NA coding upstream 307991 33246164 ~ 33263876 (-)
AMCG00013513 LOC106580829,LOC106612625,LOC105026889 coding upstream 416408 33354581 ~ 33366875 (-)
G44803 NA non-coding downstream 80302 32853256 ~ 32853765 (-)
G44777 NA non-coding downstream 175737 32756764 ~ 32758330 (-)
G44749 LOC105030512,LOC106609167,LOC106584099 non-coding downstream 276835 32656705 ~ 32657232 (-)
G44748 NA non-coding downstream 278342 32655525 ~ 32655725 (-)
G44703 NA non-coding downstream 390390 32542648 ~ 32543677 (-)
G44848 NA non-coding upstream 90094 33028267 ~ 33031255 (-)
G44862 NA non-coding upstream 118480 33056653 ~ 33056863 (-)
G44864 NA non-coding upstream 150729 33088902 ~ 33090447 (-)
G44872 NA non-coding upstream 156224 33094397 ~ 33095418 (-)
G44936 NA non-coding upstream 404836 33343009 ~ 33348520 (-)
AMCG00013488 NA other downstream 306163 32622153 ~ 32627904 (-)
G44719 NA other downstream 366115 32565760 ~ 32567952 (-)
AMCG00013425 NA other downstream 2191424 30730287 ~ 30742643 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other downstream 2447736 30483305 ~ 30486331 (-)
AMCG00013412 NA other downstream 2451741 30468630 ~ 30482326 (-)
AMCG00013518 NA other upstream 530676 33468849 ~ 33501747 (-)
G45037 NA other upstream 740051 33678224 ~ 33678907 (-)
AMCG00013531 NA other upstream 754671 33692844 ~ 33699712 (-)
AMCG00013578 NA other upstream 3941020 36879193 ~ 36885493 (-)
G45468 NA other upstream 4021004 36959177 ~ 36959914 (-)

Expression


Co-expression Network