G44860



Basic Information


Item Value
gene id G44860
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33083728 ~ 33088760 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU55923
TTGTACTTTGATTAAAGGGGAATGAAATAACTTTTGATTTTCAAATGGGACAGCTGGGAATCGAGGCAGTGAGTGTTTTTGTTAGCACTGTATGTCAGTAGTGTGTTGCTAGTTGATTCTTAACAAGGGAGACATACAGACTGCAGCTACAGACCAGTACAAAGCTGCAGTACAGGCTTGGGGTGTGTGCCTGCAATTGCCATTGCCATGAGGGAAGGGGTTTCCATCGCACATGTCCCATAAGGCGCCTCCTACCAGTAAGGAGACTCGGGCACAGAGTTGCACCCTGGAGATCTTGTAGGCAGAAATCTAATCACCCCATCTGGTGTCTGTTCCAATGGTCGGACTTCTTCTTCTCCCCATTGCTGTTTTTGTCTCCCTACACTGGCTGCACGAGAAGAAAGCTGGGAGATGCAGCGATCCCACAGGAAATTGAAAAAGAGGAGGAGAATTCAGAGTTTTACtacaaagtgttttatttatttatttatttatttatttgtattatcatttttttacaggaaaaaagcaaacaaccaccatgtatttatttatgtttctcagTGCTGTTTTCCTTCCAAATCAATCACCGGACAATTTTTAATTCAAGGGCTAATAGGTGCTTCtgagttttttaatttatttattttttattttttgtatactaGCAGGtatcttttctctttttaaagaaaaaaataattaaaaagagcGCTGTTATGTAGGAGTAAGTGGTATTTTGAATATCTCCCATCTCCCTGAAGTCAGGTACACTTGACTGAGCAGTCTGTGTGGTCTACTGTGTGCTTTTCCTGTTCTTTCATTGCTTAGGTGTTGCCAATCTACTGAGTAGCTCTCCTTGATTCTCTACTGTTGACATTAGATGATTGGCCCTCTTTAGGGCTATTCACACTACAGCCTTTATTTGATGCATATTTTAACCCAACAAGCACCCCCTTCAGTGTATTATGAACTGTTAAGAGGCTTATGATCTGATGCAGTTCATTCGCATGTTTTAAATAAGCTGCGCAGTACATTCATACCTTTCAACCTCCTATAATCTGCCTGCCTTGGGATTTTCTGATGATCTTAAAACCATTGATAATCATGTAGTCATTCTTTAACCTTTAATCATGAGCTTGTAAGCTGAATAGGtttctaattttgcatttatatttaaaaaaaaaaaaaagactaaattGAACAATGACTTCATGACTTGTTGCTGCACTGCCTAATAGATGCGTCTTGTGTCTGTATGGAATTTCATCCGTTTTTTTTCTAGCCttacaacagcaaaaaaagaaagaacgtaAGGGATTACACAGGGCCGGAACCATTGAGCATCCAAGCCCCTAGATTGTTCtatgtttaaagtttttttagGACCTTCTGCAAAGCTTCTGTAAAGCACACAATCTGGCAAACTTTGTCTCGGTGTAATTATTCAGGTTGTTTCCACTGAACCTTAGGCATTAGTCTGCATTGGCTTTGGCATCTTTGGGCTACAGAAATCTGAATCAACGGCTTGATTTTAACTCTGTAGTGtccaaaaacaaatccatttgtTTATGCCCCTTTTAAATGACCCATCTGACTGAAATTCACTTTCTCTTAATACATGGACAAAGAACATCCAGGACACGATTTAATTCAAACATATCAAAGCGTTTGTACAATAAGAACTAAGCGCTCCGGAGACGGCCAGTCAGGAAGActcatctaaagtttttctGAAGAATATCCTATCATATAGAAGCTTACTCCCTTGGTTGCTGATTGACTATATTGACCTCAGTCAGGTTACTAAGCTACCCTAAACTACATCTCTTGTCTTCTTCTTTGTCTTTTACTCTCTATATGTACTtagattaaattgtttttctaGAAACGGGCTGCACAGAAGCTATCTTGCAGTAACAATGGTGCAAATAGAACAGATTTGGCATCTAGACCGGTCGGTGTCCCGCCTCACAATAAATAGAGATTTGTGTAGATGCGGATACAAACGAGTGAATGTGagtatgacaaaaataaaagataatgtCTTGCCTAAGGCGCTGAGGAATTATATTGAAGAAAGAACAGATGGCTCGCACACTTGCTAAAACACTGCACAGTTATGAGAGAGATCCTTGATGAATTGAAATGTTGACCTGGATTCGGCCTGGATGACTATGTGTGGAGCATGTCTAATAAGTGTGTGGTGTATCTATCTTTTCCACAATAGATTGAGTAGCTGGCAGGAATTCCAGAGTCAGGGATCACCCCATAACGCACTTTCAGCTTTCAGAAACTTACACTGGGGTGAGTGACAGTGCACAGTTTCTGAGCCTCAGTCTGCAGTAAATCCACACCTTTTTTGAGGACAGTCTTCTAACATTGgaagtacattaaaaataatcataaaaaaacccTAATAAATATACATGATTGAGAGCTTGTTAATCATTTCAGAATTTGCTTTGGTTGGGTGTTCCAGCAAACCAAAAGAATAAATGCTTCGGACTACAAGACGCTGAAGTCAATTAGAGAGGTTGCTCTGTACATGATTTAGACTGATtggaaaaaagaggaaaaaaggcaaacaaaagcCGGGACTGAATCAGGTAGTTTGTTTAGCCCCAAGGCACCGGGAAATTGGAACTGCACTCTCCGCTGCTCCCGTTTATCAAACTGTGCCGCCACTCCTGTCACACAGTGCCACCGAAATAAGCTCCTTAAAACCCGGAGCAGAATTTCCCTAGCCGGCAAATCTGGGCTTTATTATTCGAGGAGAGAGGGATCACACCATATCAATGAGCACATACTCAAAACAGACATATGGAGGCAGGAGGTAATATGGCCAGCTttgaaagggagggagaggggagaggttaggggaagtaaaataaattaaaaaaataaatggaattgtATTTTCCTGCTTGGTATAGAACCATTAATGACAGGAACAGCACCAAACCACGACTGCACACAGATCTGGCAAGAAGCGTGAGGCCAAACCCATCTGTACAGGTTTGACAGAGCCCCCTTAAATCATCTGTGTTTTACGTTTCTGATTAGTCAACTCCTCATCCAAAAAAGATCGAATCCTTATTATATTGGAGACAAATGCATATCACTAACTGAACAGCGATATTTGACACCTGGCAAAATACGGACAACAAGTGTGTCTGACCCCTGGTGTGGTGCATGCTGGGTTAATACCTGGGGTTAATGCTAATCTGCCAGTTTTCCACCTCTTGACACCCCGGGGATCTGTCTGGTGTGCAGCCCGAGCAGATACAATATTAATGCCATAACCCTTCTGACTGTCAGGAGCCACAGTGCCTCTTCAGCATCTCTTCAGTGATTCAGATGCGCACGGCCCGCCAATTGTGCATTGTGCGTTAGTCAGCCTTGTGTGAGGCATTTAATGAGTGGAAGCTGTCAGACGGAAAACGGCAACAGGGAGCGCTGCCACTCACTCTACCCGACGTTTCCACCCCTCAGGAAAGTGCCAACGCAGGTGCTGGATGGTCCACAGTCCAGTTCCTTGTGTGGATCACGCTGAATTAGTGGgggacacattttgttttttaatcaattaagcaagacTCTCTTGTCCAATTAAGGGCATTCTGGACTGTGTGGGACTGTTGGGTATTCAGCTGCTTGTTCCAAGTAATTTCCTAAATGGCTGAATTGATCAAGACCCACTTAATTGATGTCCTGAGCAAACTCTTTTCTTCTGAAGTCTCCAGCCCTGGTGCTGGAGATTTACACTGTACAGCATCTTTAGGTCTTCATTCCAGCCATGCTCCCGTATACTTCATTGAAACCATATTTGGCTGATGTAGTCGAATTTTAATGGAATGTTAAGCCACCGATTTGAAGCCTTCTATACAACCTGGGGTGACTGGGATTATTCAGGTACAGCACAAGTGTTGAAGACCACTGTTATAGTCAACAGGGGAAAGATACCACCACATCTGGTTAGAGTTgaggtttttctgtttttctttctatatgTAAACTGGAGTCCCACACATGCTGTTAGCTTGGTAGCTGTAACTGAGCAATTAgtattaaatgtgattttaaacagGCCTGCTTTAATTATTGCAGTAtgacatatttagttttgttttctcaatccGTATGTCCTGGCGAGGGAAGTACTGTCACTCAAACTCAAAAACTATTTCATTGAATCTTGCATATCAGTTTAAGATGAACAAAATGcacttgcaaaagaaaaaattgcTCAGAGAAACAAAAGGGATTAGAAAGAAAACCGTAAAGATAGGCATAGTTCATAGTAGTTCATCCCTGGTTTTCAATGTCAAGAAGGTGCAAGTTTTCCCTACTGTGGCCTtactcagtcagtcagagtcAGTTTACTAATGACCTTCGtgttaatgtttctgtttttctgaaaagTCGGGAGGGGAAGCAATAACCATATAAACTTGTTCAGGCTGTGCAGCAAAAGGACATGGACAATTTttcatgcttgtttgtttgtaattgcTTCGTTAAATCTATGGCTTTATTAAGAAAGCGACAAGGCTGACTGTTAATTATTAGGCAGATgaataattgaaaatggaagAACAGAGAAATTCATCACACCTTATCTGCAGCACGGCAAATAATGAATTTGTTCCCTGTCTGCTTTCTCCTCAGCCATGTTATATAGTCTCCTACATGCTTCACTACCTATTTGCTGTGAAAGTGGGTTATTATTCCATTTGTTTGTCAGCCATTCTTTCCTGACTGATTCAGTGCAAAATGCTTTCTAAACAGATCTTTCTAGCTTAATTgtgagaggaggaggtggggagaGCTGGATGATCACACGTTATTGCCTGGCAGTAATTGGAACGAATCCGGGCAAAAGCACTCCCGCTTCACATGTCAGCTGCCGTTAATTTCTTTTGAGCGCAAAGGCGGTAtacaaaatgagaaataaacacaaa

Function


GO:

id name namespace
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU55923 True 4964 lncRNA 0.41 2 33083728 33088760
Loading

Neighbor


gene id symbol gene type direction distance location
AMCG00013503 ttc9b,LOC107096866,LOC103357803 coding upstream 317 33080737 ~ 33083411 (+)
AMCG00013505 NA coding upstream 22448 33056761 ~ 33061280 (+)
AMCG00013504 NA coding upstream 38374 33032612 ~ 33045354 (+)
AMCG00013501 NA coding upstream 61928 33015315 ~ 33021800 (+)
AMCG00013502 NA coding upstream 87644 32977931 ~ 32996084 (+)
AMCG00013509 NA coding downstream 103875 33192635 ~ 33239625 (+)
AMCG00013510 NA coding downstream 183966 33272726 ~ 33284978 (+)
AMCG00013512 numbl,LOC106535595,LOC101072040,LOC106965209,LOC103154637 coding downstream 240551 33329311 ~ 33347695 (+)
AMCG00013514 NA coding downstream 363257 33452017 ~ 33464680 (+)
AMCG00013520 NA coding downstream 428395 33517155 ~ 33521234 (+)
G44790 NA non-coding upstream 245885 32837315 ~ 32837843 (+)
G44769 NA non-coding upstream 325348 32756738 ~ 32758380 (+)
G44747 NA non-coding upstream 428026 32655503 ~ 32655702 (+)
G44702 NA non-coding upstream 540052 32542635 ~ 32543676 (+)
G44620 NA non-coding upstream 797569 32286014 ~ 32286159 (+)
G44861 NA non-coding downstream 56 33088816 ~ 33090427 (+)
G44865 NA non-coding downstream 5542 33094302 ~ 33095508 (+)
G44867 NA non-coding downstream 11714 33100474 ~ 33100687 (+)
G44868 map3k10,LOC107554498,LOC107560156 non-coding downstream 13879 33102639 ~ 33102873 (+)
G44869 NA non-coding downstream 14407 33103167 ~ 33103392 (+)
AMCG00013478 NA other upstream 628042 32423276 ~ 32455686 (+)
AMCG00013477 ppp1r37 other upstream 683276 32393818 ~ 32400452 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other upstream 798777 32273268 ~ 32284951 (+)
AMCG00013468 NA other upstream 1171927 31901530 ~ 31911801 (+)
G44325 NA other upstream 2306559 30776851 ~ 30777169 (+)
G44870 NA other downstream 17532 33106292 ~ 33106595 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other downstream 287760 33376520 ~ 33412841 (+)
AMCG00013516 NA other downstream 353634 33442394 ~ 33449093 (+)
G45029 NA other downstream 606832 33695592 ~ 33699545 (+)
G45072 NA other downstream 1025913 34114673 ~ 34114939 (+)

Expression


G44860 Expression in all Baseline Samples

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G44860 Expression in each Bioproject

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G44860 Expression in each Sample
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Co-expression Network