G44861


Basic Information

Item Value
gene id G44861
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33088816 ~ 33090427 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU55924
CGCCTCAATGCTGCTGGGAATCTTGAAGCCAGGTGGCATCCTTGCTCTTTCATGGGCACCGAAGCGCTGCACTTCAAAGGGGTGGAACACAAAGACGCAGCCGATGAGAATGAAGTGAATTCGGCAGTAATGTGGGGCTTAAGTGGGATATGACGCAGGTTGGCAATTCAGCAACTTGAGACGTAGCAAAATAAGGCTGCAGTGACCAAACTTGGGCTTTGAAATGCCAGTCTGgcttggggggtggggggagcatGAATATCTGCTTTGCACTGTCACACCTGAATCAAAGATGGAGGAGTCGCTGATGTCTTCTGTCAgacattgtgttgtattttcttgtcGTGAAATGCTTGAGGTAACTTAAGCCTGGTTAATGAAAACTATGGTCCTTAGATGAATAGTGAAAAAGTCTGCTGTCCAATGGTTTCTTTGCAGTTATTCTTTCGCTTGAGGTTGTGCCAAGGAAGGGGACCAGGCTGTGTGGAAATGACAGCACTGGCACACCActggggagaggaggggagttATTAATGGTTCTGACCGAACATGAAGCAGTCGCCACAGCCTCGAACCACCCTCCCCTGCCACTGGATTCTAAATGATGAACCGTAAAATCAATCAATGCCTGGTCTCCCCCAAAGGACTTTGTAGATTCCTTCCTAGAGACACTTTATCCTATAACCGACCATCCTAGCGACAGAGAGAACTGTCTTGGTTCTGTGTCAAGACCAGTCAGGTCGGACTGCCCAGCGAAAgactgaaagaaagaagaaaatctgCTGTAAAGGGGACAAAAGCACAACTGGATAAAATGTGGAAAGTGttattcaaatgttattttcttcattttatagTAGAGGTACTGTCTGACTGTGAAAGTGGGgttttgtggtttaaaaaagaggaaagctttatttatgttatgttatttctgaatttctttgttttgaggGGTGGGCATGGGGCTGAATATTTCTGAATTGTGAGCTCTGTGAGCGAAATCTATCGATGCTTGTGTATTAGGGGACAACCAAACCCTGTAGGCATTTGCTGTCCCAGTGGACAAAAACGTTAGCAATGCTAGTGCATTACCGTATCAACTGTGGACACCAGGGCTCTCCATTCAGGGCATCTGTAGTAGAATGAATACATCACCTGTTCACCTATGGAAGCCTGTGGTCCATTCTGGAGTCTATAGTAGGGTCGCTGTTAATGTTAATGCACTAGCCTCCAGAGACTTAAACTCCTGCCTGGAGGTCTAGGTCGTGCCTTTCATCCACAAGTTCATTCTatccaatttttatttttctgggaaGTGTCACATATCCAATGAAAGCTGGCCATGCTGGGTTTTTACAATCGATCAGAATGAGAGAACTGTATGGGATTTGCCTTCTGGACAGAGGGTGGGGTTGACTGAGAGCATTGTTAAAGTGACGATAATCATTTCATATAAAATCCGTATCGAATTTGAAGTAGACCATGCATTTAActgtttagaagaaaaaaaaataaaggaaagtacagaaacaaaaatttgaaaacaaagtgGTGGTAATAGAACTGCTAGCAAATGAATGCACTATGGATTGATATTTgatgaatcaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55924 True 1612 lncRNA 0.44 1 33088816 33090427

Neighbor

gene id symbol gene type direction distance location
AMCG00013503 ttc9b,LOC107096866,LOC103357803 coding upstream 5405 33080737 ~ 33083411 (+)
AMCG00013505 NA coding upstream 27536 33056761 ~ 33061280 (+)
AMCG00013504 NA coding upstream 43462 33032612 ~ 33045354 (+)
AMCG00013501 NA coding upstream 67016 33015315 ~ 33021800 (+)
AMCG00013502 NA coding upstream 92732 32977931 ~ 32996084 (+)
AMCG00013509 NA coding downstream 102208 33192635 ~ 33239625 (+)
AMCG00013510 NA coding downstream 182299 33272726 ~ 33284978 (+)
AMCG00013512 numbl,LOC106535595,LOC101072040,LOC106965209,LOC103154637 coding downstream 238884 33329311 ~ 33347695 (+)
AMCG00013514 NA coding downstream 361590 33452017 ~ 33464680 (+)
AMCG00013520 NA coding downstream 426728 33517155 ~ 33521234 (+)
G44860 NA non-coding upstream 56 33083728 ~ 33088760 (+)
G44790 NA non-coding upstream 250973 32837315 ~ 32837843 (+)
G44769 NA non-coding upstream 330436 32756738 ~ 32758380 (+)
G44747 NA non-coding upstream 433114 32655503 ~ 32655702 (+)
G44702 NA non-coding upstream 545140 32542635 ~ 32543676 (+)
G44865 NA non-coding downstream 3875 33094302 ~ 33095508 (+)
G44867 NA non-coding downstream 10047 33100474 ~ 33100687 (+)
G44868 map3k10,LOC107554498,LOC107560156 non-coding downstream 12212 33102639 ~ 33102873 (+)
G44869 NA non-coding downstream 12740 33103167 ~ 33103392 (+)
G44871 map3k10,LOC102787573 non-coding downstream 31593 33122020 ~ 33125449 (+)
AMCG00013478 NA other upstream 633130 32423276 ~ 32455686 (+)
AMCG00013477 ppp1r37 other upstream 688364 32393818 ~ 32400452 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other upstream 803865 32273268 ~ 32284951 (+)
AMCG00013468 NA other upstream 1177015 31901530 ~ 31911801 (+)
G44325 NA other upstream 2311647 30776851 ~ 30777169 (+)
G44870 NA other downstream 15865 33106292 ~ 33106595 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other downstream 286093 33376520 ~ 33412841 (+)
AMCG00013516 NA other downstream 351967 33442394 ~ 33449093 (+)
G45029 NA other downstream 605165 33695592 ~ 33699545 (+)
G45072 NA other downstream 1024246 34114673 ~ 34114939 (+)

Expression


Co-expression Network