G44936


Basic Information

Item Value
gene id G44936
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33343009 ~ 33348520 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU56003
attatattatttatttatctttgtacaatgtaattataatacaaatatgtaggTTTAGATAcaaaaatctgtaaataaagattaaaaataagattGACTGGTTTGTTATCACTACACTACAGTTTACAATCAAGTTTATGAGgtaatttagtttcttttttcttcttcttcttaaacaTATTGACCTACAAATTTAGATAGGGGGAATGAGgggcaaaaataataatgtaaatataacaaTCAGTACTTTATTGATTGGCATAGGGGGAAAGAACATGGAGAGGATGTATATTTGTACGAGTACCTAACAGACAAGGTTTTACACACCGAATACTGAGCTGTGTGCGAACTGTACCATTTTTGGAACGTCATATGTGGCCCCCGCTCGCAGAGAACGCCTGAAGCACACAGCTGTCCCGGTTTTGCTCTACAGAGTCCACTTCACCACCTGCACAAAACCCTGCTTTCCGGTCCAGTCAGAGAGCTTCGTTAACTTAAAGACTTTCGAGAAAAGACGCATACGACCAGCGTTTGTTCAGTGTCGGCCGCGAAGGGTCATGAACCAGCCGCCAACCTCACCCTGTGTGGACGGAATATGTCTGCCCATGTAGCGCCGTGCTGAGCCCAGATCCTGTGAAAACTGCCCCACTGCAGGAGTCCAGGCAAGTCAAGGTGGATGTTGGGTATATCCAATGAAAGACCAGCATGGAGTATCAAGACTGGAGCTTGTGATTGGTGGGTTGGTTATTAGGCGGAAgtcttttctttaataaatcaaGTTCACGGTcaagaaaacacacattctGAACCTGATTGCCTCATCCCAAGGTGACCAACATGTGCTGATAACacgcaaggaggaaaacaaaccaGAAGTACCATTTTTGGATCCTGGCTGGTCTGCAACATTGGGCCGCAGCTCGAGAAACACAAAAGGTATTCCTGTCATGTTTTGAATTTATGTGTAACGGAACTGGCtatgatggattttttttttcttgttttaaatcacattatgctcttacaatttaagaaaataaattcgATGACTTGGCGGAAAGTCATCCTTTTCCTGTACTTATTCTCGAAAAAGTAATCTCCAGTTAGGCTGCAATTCAGTCTCACTGAGTGGGGTGACCCTCGACTAGTCCTGGTATCAACTCACAGGCCAAGTTATTGTACTAACCAGATATTTTTATTCCccatttggtttggtttctaTCACGTCACATATTTAACTCATTCTTTGACCATTTTTGTGGACCTTTCTTTACTCTGCAGAGGTTTGAAATCTCcttgtttaattgaaaagctGCATTGTCTGTGTCCACTAGGCATCACAAAGCAGTGGAGTCATACAGCTCCCCCAATACAGTAGTATATGGGCCTAACCATGCGTTGTACTGTACCTCACGTTTCAAACACAGCGACGCCTCGTAATTGGCCAAAATACTTCCTTAGGTTGTATATTAACACACTGCTAaaatttcaaagcaaaataaaaataactcttCCTTCACCTCCATccaatttaaaacatacactATAGAATCTGAGGCCTTTCTATAGTCAAGCTCAAGCAACATCACTCCTCAGTAATGCCAGTCACTCCCAGCTaaaaatctttttcttttggtttctcAAAGGAAAAGGACCCACTGAGTCAACAGGCTTGATCCCTGATGTCTTTACAGGAGAAGGAAACAGGTTtgatgtttgtcttttaattatCTGGACCAGAGTAATGTAAATCTGtcactaaacaaaataaaaataaagataaaattacaaaacaaaataaattattataaaaacaaccaCTCTACTATTAAACAGCTATACGAGTTGGCAAGGATGTTTGTTGAGTCAGTTCACCAGCTGTGTCACATCCGTCATCTTTGGGTGCAAACCCACTTATGGTCTCCAATTTGAATGGatctgattggttggttagtCTCCCATCACAAAACACTAACATGCTGCAGAAAAAGGCAAAAAGTCTGTCAGGAAACACATGGTCAGTCACCGATGGGCATAGAAACAGACGGGTCCGTGGGAATGGGCAACCAATGGTAGTGCTCACGCAGGGGGTTGTAATAAAGATAATGCTAATCATTCTCAGTTTCCATCTAATATTACAGaatatcattttgttttgggcACCCAATCTGTAATTCAATGCCATCTGTCTACTTCCTTTACATTTCCTGCACCCTCACCTGCCACACTGTTCTTCTCACTGCCCCTAGCTTCCTCCGATATACAGACCACCCCTTAATTTCCATCAAAATCTAATAGCCTCTGATGCTGGGCTAATAGGAAGTCTCCTGTCTAAGAGTTACACTAGAGGGAGCCTCCTTTAGCTTGATCCCTCTGTGTCAATCACTATTAAACTCTCCCCCGTCATCTCTTCTGCTCTTCAAACCTTACCTCGGTCTGTTCTTCCCTTCAGTCAGTGCAAAACTTCCTCTATTGGTAAACACTTCCTCACTTTTGAGTCTTGGCTTGGCTGCAGTTtccaatctttttatttttaaatcaagactGCAAACCAAAAGTGCACTGAATAGTATGCTGTATAGGTCaacgaaaagaaaaacaaagctagAGCAAACTGTATGGATCTGTCTGTCTTAAGTCTCTGAGCAGCTCAAGATATATCAGATATTCCCAACGTCTCACTCATGCACTTCCGCCACCTGCTACCTACTCCAACCTGCCTGGAACCAACCCAACCTCACATCCCCCTACTTTCCTCCTGCTGCCTGCCTCCTCCCCTGTCAATTCCTTctctaataataaataaatacatcaacaggATTCAGCAGTCACAGAGGGCTCAATAAACCTAATATCCAGGAGCCCTGAGCCCGCAGTCATCCAATACAAAGTCTGATCGGGTTTGACTGAAAAATAGTTTTGAGCGATAACTGCATTGGTTTTGACCCAAGCTGACCTGCAATACCActgccattaaaaacaacaaaaaatgcttGCTTGTTCTGTGTGACCTCAAATTCTTTCCCTCCCTTAATTTGAGCAGACTGACCCATCTGTATTGTGTAGGCTTGGCGTAGGAATGCCACTTATAGGAGTTGACTTTGGTGCCCAACCACTGACCCTATCAAGGTCGCCAGCATCAACAGAGACCGAGATCCATCACAAGCCCCTCCCATTCATCTCTGAAAGGTAAAGGGACTGGTATGAACTAGCCTTAGACACCTTACCAAAACCAACAAACTACCAAAATAGGGCCAGCGCTAAATAACATGGCTGGTGAACTAGCCCCCTTTGTCGACTGCACAGGCTAGGAGCACGTCACACATAGATCGGCATGTGACACCTGACAGCTTGGTTTAAGGGTAATTtggaaaagcaaaccaaaaaaaaaagcatgacaaaCCTGCACACACTTCCACAGCCTACATGGGATGGTTAGACAGGCCTAGGGCCTATCATGATGTGGCTCTGTGAGGATCCACTGCTAACATTGTGGACTGCAATGAAGAGAGGGGATTGTCTTGGCTAGCACATGCctaggaagtgtgtgtgtgttttagaagGAGATAACACAGGCCTTCAGCTCCCCCAGATTAGTTCAGAAGTACAGCATTCAGTCAGGTTGAAGATCAAAAGATTTATCCCAGTGTAGATTTGGGAAAACAATTGCTGATTTCAAGTGATGATAACAGCCGATTGCAAATTAAAGCACATCACATACATCATTTTCATGGtgctacaaaatattttctattacGGGGAAGGCTAAAAGATGAACATGAACGGCAATAGGCTTCACTTGAAATCTTGATGCAAATACAATCTGACTTGTTGAAGTACATCCACCTTGATCTTTGAGAACCTGAACAActgaacacacactcacacgtgTGCTTTCCTACGCATGTGCTGTCAGGCCTCTTTTCACAACACTGGAGGGCATAGAAATGGCAGACCATAATTACCAGCTGCAGGGTAGAGCCAACTGCCCACCCAAACCCCGGCATGGCTTGGGCAGTTTTGCCATGTTGAAAAAGcatgttgtttttcccccccttcttttacaaaaagaaacaagaagtGAATTAGGGAAAGGAAGGGAAGTAAATGGCAGATTGACTTATTTTGTTCTTTTAACTTGTGCTTCAGCTTTAATGCTTCTTGCCTTGAGATCATCACCCTGTTGTGAAGCAGGCCGTGGCCATTAGGCGGGATGTTTTAGGATTCAAAATATGGCCTCTTGTCGCAGAAGAAGAATGCTAACctcagttgttttgttttgtcttcacgGTGTCACAGACATGAAAATGGAGTGTTTAAGGTTACAGGTCAGAGCGCTGGCATCCACAATCTGAGATGAAGTGTATCCAGAAGACATAAGGATCAGTTAgtctttcttcatgtttttggGGTTCGAGTAGGTAGGGGGGAGAAGggatggtttgttttgttcgtACAGTGGAGTGTAGGGAGCGGGGGGGAGAGGAGTGGTTCAGCCaagaaaaattaaagaaaaaaggaatgaaaaaagacagacaggaagacagacagaaaggaaGCAATGAACGGAAATAAAAACTCCCAATAAAAATGTAACGTAACGTAAAGCAGAGTGGTTCAGTCTTGTCTGCGCTGTGTCTGTGTCGCAGTCCGTACAGCCGGCCTGGGGCTCAGTTAAAGCTCGATctcaaatgttttctgcagGTCGTTAGAGAAGGGGTTCGCTGCTTTCTGCTGGGTTTTGGACTCCAGTGCTGCCCACTGAGCCTCGAAACGATCGGCCTCCTGTGCGTCCCCGGATGCGCCTGCCAGCTGCCGGGCCTCCAAGGGCCAGCCTGTGCTCGTCCCGTTTGTGGTGCCATTCTGTGTGGCAGTGGCCATAGGTGCGGGcatgggggggatggggggcatGCCGTTGAGGGCGGCGGGGTTGTGGTAGGGGCCGACCGTGAAGCCGGGGGTGGTGAAGCTGTGCCCTCCCATCTTGCCCACCCCCCCGGCTGTGGGTGCCCCTGAGGCTGCCGCCGTGCAGAAAACATTGGCCACCATCTGGGAGGGCGTGATGCCCACCACAGGGACGCTGGCATTGGGGTAGGTCATGCTGTTGGCCAGGGCTGGCATGTAGGTCGGCATGGGCACAAAGGCGGGCTGCAGGGGCGGGGGGGCATACATGCCCACTGGTGCTGGGGTGGCATCGAAGGCCATGGGGAAGGGCTGCATGGCCGAGGGCAGGGACATGGGCACAGCGGACATGGCTTGGGGCAGCTGtgcttgctgctgctgtggttgttgctgctgctgctgggcttTGACCGCCTTCGCCACCTCCTCCAGCCAGCGCTCGGCCTCTGAGGGCGTCCGCTTGTGCCCGCCTtggaaggggggtggagactGGGTGGGGGGCTCGCTCTGTGCCCATGTGGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56003 True 5426 lncRNA 0.46 3 33343009 33348520

Neighbor

gene id symbol gene type direction distance location
AMCG00013511 NA coding downstream 79133 33246164 ~ 33263876 (-)
AMCG00013506 NA coding downstream 199621 33130054 ~ 33143388 (-)
AMCG00013508 map3k10,LOC102787573,LOC107756783 coding downstream 220138 33121972 ~ 33122871 (-)
AMCG00013507 NA coding downstream 234513 33096639 ~ 33108496 (-)
AMCG00013496 NA coding downstream 506411 32833847 ~ 32836598 (-)
AMCG00013513 LOC106580829,LOC106612625,LOC105026889 coding upstream 6061 33354581 ~ 33366875 (-)
AMCG00013517 NA coding upstream 80585 33429105 ~ 33440936 (-)
AMCG00013527 NA coding upstream 208511 33557031 ~ 33576604 (-)
AMCG00013528 LOC107709035 coding upstream 247810 33596330 ~ 33609620 (-)
AMCG00013534 lrfn1,LOC106613031 coding upstream 1183910 34532430 ~ 34544065 (-)
G44872 NA non-coding downstream 247591 33094397 ~ 33095418 (-)
G44864 NA non-coding downstream 252562 33088902 ~ 33090447 (-)
G44862 NA non-coding downstream 286146 33056653 ~ 33056863 (-)
G44848 NA non-coding downstream 311754 33028267 ~ 33031255 (-)
G44815 clasrp,LOC102789808 non-coding downstream 404836 32934067 ~ 32938173 (-)
G44940 NA non-coding upstream 67013 33415533 ~ 33416219 (-)
G44941 NA non-coding upstream 67776 33416296 ~ 33422111 (-)
G44995 NA non-coding upstream 240070 33588590 ~ 33590089 (-)
G45007 NA non-coding upstream 266888 33615408 ~ 33615642 (-)
G45010 NA non-coding upstream 272932 33621452 ~ 33621738 (-)
AMCG00013488 NA other downstream 715105 32622153 ~ 32627904 (-)
G44719 NA other downstream 775057 32565760 ~ 32567952 (-)
AMCG00013425 NA other downstream 2600366 30730287 ~ 30742643 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other downstream 2856678 30483305 ~ 30486331 (-)
AMCG00013412 NA other downstream 2860683 30468630 ~ 30482326 (-)
AMCG00013518 NA other upstream 120329 33468849 ~ 33501747 (-)
G45037 NA other upstream 329704 33678224 ~ 33678907 (-)
AMCG00013531 NA other upstream 344324 33692844 ~ 33699712 (-)
AMCG00013578 NA other upstream 3530673 36879193 ~ 36885493 (-)
G45468 NA other upstream 3610657 36959177 ~ 36959914 (-)

Expression


Co-expression Network