G44954


Basic Information

Item Value
gene id G44954
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33439835 ~ 33441164 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU56025
gtgaaaacaaaacaactattcagattattattagttattttattagatattacagcaaaacaaacacaaatacaacaaacaaaccttcCAAATTAACAGGTAACATGTATAGGACTAAAGAGCTGGGGGTCATACTTCTTTCAATGTGATTTAGCAggacacacatttatttgttttggaagtTGCTCTTTCCAGGTTTATTGGTGTAATCCAGTAATAAAAACTTCAGCTAGTTTTGATCAGGAGTCTCTGTACACAGAGAATAGCTTTGCTGTCAGAACTACTTGGTTTTCTTAAGGGTtacttacaaacacacacattaaacagtGCTGGGACTACAGGTAGAGCAATGTAGGGAACAGAACAATGAGGAACCCAGGGATTGAGATCCAGAGACCTACCCACCACATCCTTGAGTGTAAGTATTTCAGTCCCATGTGCCcacaatatatatgaatatatagatAGAAGGACAGATATTTACAGAAAtagataaaaatataaactttgaCTGTTCTTATCATTTTTAGTACATTTTCAGTCCCATGTGCTGGtggttttgtttgggtttttgtaaataaagtgcttaatttttaaagtttaattctGATTGTGCCTCCTACCTCCTGGGTGCCAgctcacaatatatataaatatatagatagaaggacagatatatatatatatatatacaaatagatataaataaaaactgcctGTCCTGTCAAATCATGTATATAGGGGAGGGGGGGCACAAGATATTCCTGCTTTGGGCCCCCAATGGGCTAAAACCGGCTCTGACTGGGAACATACTGTAGTTATGTTTCAAAGCACAGAACATAGTCAATGAAGGGAGAGGTTGATTTGGCAGTAGTTACCGGTTAAACCTGGTCGATCAGGTCAGACAGTCTTATTCCACAGTATATAAGGGCACTTCATGGTCAGGAGggtgttattttgtgtgtgtgtgggtgtgtgtgtgtgtgtgtgtgtcctcccCGCTCTGTGCCAGGCAGTGGTCACTTCTGCCTCACAGTCCCAGTGTCTGTGGCTTCACCTGGCAGCCCAGCAGAGAGTTCCCAGCCTCCAAATACTGTGTCATGCTGagccctgaaacacacagcacaaacacacacaggagcaTCAATACACAGTCACCACGACCCCCCAtcaacacacacagtgcacactACTGGACTGACACAGCGGGACACATCCGGCACTACTGAAGGCACACAGAGTCAATCAATCACAGGGACATACAGTGTGGGACCAGTTGCTTAAACATAGACTAAGTCCTTGTCTTGGTATGATGACGGAGTGCGGTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56025 True 1330 lncRNA 0.41 1 33439835 33441164

Neighbor

gene id symbol gene type direction distance location
AMCG00013512 numbl,LOC106535595,LOC101072040,LOC106965209,LOC103154637 coding upstream 92140 33329311 ~ 33347695 (+)
AMCG00013510 NA coding upstream 154857 33272726 ~ 33284978 (+)
AMCG00013509 NA coding upstream 200210 33192635 ~ 33239625 (+)
AMCG00013503 ttc9b,LOC107096866,LOC103357803 coding upstream 356424 33080737 ~ 33083411 (+)
AMCG00013505 NA coding upstream 378555 33056761 ~ 33061280 (+)
AMCG00013514 NA coding downstream 10853 33452017 ~ 33464680 (+)
AMCG00013520 NA coding downstream 75991 33517155 ~ 33521234 (+)
AMCG00013519 NA coding downstream 96055 33537219 ~ 33538322 (+)
AMCG00013523 degs2,LOC106603795,LOC105011018 coding downstream 141390 33582554 ~ 33585179 (+)
AMCG00013524 polr2i,rpb9,LOC102785323 coding downstream 151046 33592210 ~ 33595459 (+)
G44871 map3k10,LOC102787573 non-coding upstream 314386 33122020 ~ 33125449 (+)
G44869 NA non-coding upstream 336443 33103167 ~ 33103392 (+)
G44868 map3k10,LOC107554498,LOC107560156 non-coding upstream 336962 33102639 ~ 33102873 (+)
G44867 NA non-coding upstream 339148 33100474 ~ 33100687 (+)
G44865 NA non-coding upstream 344327 33094302 ~ 33095508 (+)
G44983 NA non-coding downstream 91608 33532772 ~ 33533155 (+)
G45100 NA non-coding downstream 1492042 34933206 ~ 34933787 (+)
G45108 NA non-coding downstream 1609693 35050857 ~ 35057957 (+)
G45124 NA non-coding downstream 1678915 35120079 ~ 35120344 (+)
G45129 LOC105030512,LOC106584099,LOC106569888,LOC106613431,LOC106573797,LOC106609167 non-coding downstream 1700258 35141422 ~ 35142529 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other upstream 26994 33376520 ~ 33412841 (+)
G44870 NA other upstream 333240 33106292 ~ 33106595 (+)
AMCG00013478 NA other upstream 984149 32423276 ~ 32455686 (+)
AMCG00013477 ppp1r37 other upstream 1039383 32393818 ~ 32400452 (+)
AMCG00013473 LOC105911162,LOC105012052,LOC107580644,LOC107566293,LOC107577119,LOC107725066 other upstream 1154884 32273268 ~ 32284951 (+)
AMCG00013516 NA other downstream 1230 33442394 ~ 33449093 (+)
G45029 NA other downstream 254428 33695592 ~ 33699545 (+)
G45072 NA other downstream 673509 34114673 ~ 34114939 (+)
G45174 NA other downstream 1893726 35334890 ~ 35338052 (+)
G45209 LOC107575789 other downstream 2214138 35655302 ~ 35659833 (+)

Expression


Co-expression Network