G44983


Basic Information

Item Value
gene id G44983
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33532772 ~ 33533155 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU56062
atagcctacagatgtctgctgagaatttgtttatggcttaatcgtttctccagaattgtttctgttaaagaacgattgacactaggtaaatgacgactgtgggatcgcatcttcctagtgcacatcaaagacggacatctgctttggatccatcacctcttcacgggaggacagatcgtaaacggacctGGACCtatatcttctgattggatgaacggccataagatgttacgtcatttttcctataaagctgcactcatgtttgtaaacattaagtctcactgaaggaattattcctgacgtggggcttccgagccgcttgattaaagttctatttgctttgtctccgcgacttctccacttatttccgagacggttctacaa

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU56062 True 384 lncRNA 0.43 1 33532772 33533155

Neighbor

gene id symbol gene type direction distance location
AMCG00013520 NA coding upstream 11538 33517155 ~ 33521234 (+)
AMCG00013514 NA coding upstream 68092 33452017 ~ 33464680 (+)
AMCG00013512 numbl,LOC106535595,LOC101072040,LOC106965209,LOC103154637 coding upstream 185077 33329311 ~ 33347695 (+)
AMCG00013510 NA coding upstream 247794 33272726 ~ 33284978 (+)
AMCG00013509 NA coding upstream 293147 33192635 ~ 33239625 (+)
AMCG00013519 NA coding downstream 4064 33537219 ~ 33538322 (+)
AMCG00013523 degs2,LOC106603795,LOC105011018 coding downstream 49399 33582554 ~ 33585179 (+)
AMCG00013524 polr2i,rpb9,LOC102785323 coding downstream 59055 33592210 ~ 33595459 (+)
AMCG00013522 NA coding downstream 77012 33610167 ~ 33613789 (+)
AMCG00013529 NA coding downstream 85145 33618300 ~ 33619481 (+)
G44954 NA non-coding upstream 91608 33439835 ~ 33441164 (+)
G44871 map3k10,LOC102787573 non-coding upstream 407323 33122020 ~ 33125449 (+)
G44869 NA non-coding upstream 429380 33103167 ~ 33103392 (+)
G44868 map3k10,LOC107554498,LOC107560156 non-coding upstream 429899 33102639 ~ 33102873 (+)
G44867 NA non-coding upstream 432085 33100474 ~ 33100687 (+)
G45100 NA non-coding downstream 1400051 34933206 ~ 34933787 (+)
G45108 NA non-coding downstream 1517702 35050857 ~ 35057957 (+)
G45124 NA non-coding downstream 1586924 35120079 ~ 35120344 (+)
G45129 LOC105030512,LOC106584099,LOC106569888,LOC106613431,LOC106573797,LOC106609167 non-coding downstream 1608267 35141422 ~ 35142529 (+)
G45135 NA non-coding downstream 1642080 35175235 ~ 35175446 (+)
AMCG00013516 NA other upstream 83679 33442394 ~ 33449093 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other upstream 119931 33376520 ~ 33412841 (+)
G44870 NA other upstream 426177 33106292 ~ 33106595 (+)
AMCG00013478 NA other upstream 1077086 32423276 ~ 32455686 (+)
AMCG00013477 ppp1r37 other upstream 1132320 32393818 ~ 32400452 (+)
G45029 NA other downstream 162437 33695592 ~ 33699545 (+)
G45072 NA other downstream 581518 34114673 ~ 34114939 (+)
G45174 NA other downstream 1801735 35334890 ~ 35338052 (+)
G45209 LOC107575789 other downstream 2122147 35655302 ~ 35659833 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other downstream 2527600 36060755 ~ 36085843 (+)

Expression


Co-expression Network