G45100


Basic Information

Item Value
gene id G45100
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 34933206 ~ 34933787 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU56191
atttgggctctgagctgaagcactgatctaaagaagacctctccccccccaaagttatcagatttccttagctcatcagcttggaactggtttgaatcaaagtgacagttttggggaggatggcaccgagaagaggccaaatagtttggaattctgctatgagatgtctggagaaaggggcctgtaggtgataaaaactctttgaagtggatgagagccgaaatcccgacatagagctacgaccccaggccaaccggcatttccaaaagatggcatggattgacatcagtcataaatcaagcccccctccaataggacactgggggctgaaaccgaaatccaatctcaagaactcagggaccaatcacctattgatctgacagactataaggaACAGGCGgacagtctttctctctctctatctctctctcacctgaaccagtaactcgctgccacagctcaacctgtagctctgttgcccgaaccggaaccagaaaccaaccaagtctttgccggcaacagaagagttaaactgggagaaggagattgagccgtacgaagaattcttttaaaggactttat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56191 True 582 lncRNA 0.47 1 34933206 34933787

Neighbor

gene id symbol gene type direction distance location
AMCG00013533 NA coding upstream 849089 34081183 ~ 34084117 (+)
AMCG00013532 zgc:172282,LOC107697541,LOC107758157,LOC107678250,LOC107555640,LOC107749639 coding upstream 874211 34057613 ~ 34058995 (+)
AMCG00013530 NA coding upstream 1239309 33670735 ~ 33693897 (+)
AMCG00013526 NA coding upstream 1263913 33664077 ~ 33669293 (+)
AMCG00013525 ppp5c coding upstream 1271433 33647849 ~ 33661773 (+)
AMCG00013540 gmfg,LOC105934520,LOC107090391,LOC103032687,LOC106520392 coding downstream 184622 35118409 ~ 35129062 (+)
AMCG00013539 med29 coding downstream 204562 35138349 ~ 35141343 (+)
AMCG00013543 NA coding downstream 280847 35214634 ~ 35217638 (+)
AMCG00013546 NA coding downstream 373577 35307364 ~ 35309555 (+)
AMCG00013545 NA coding downstream 392204 35325991 ~ 35331505 (+)
G44983 NA non-coding upstream 1400051 33532772 ~ 33533155 (+)
G44954 NA non-coding upstream 1492042 33439835 ~ 33441164 (+)
G44871 map3k10,LOC102787573 non-coding upstream 1807757 33122020 ~ 33125449 (+)
G44869 NA non-coding upstream 1829814 33103167 ~ 33103392 (+)
G44868 map3k10,LOC107554498,LOC107560156 non-coding upstream 1830333 33102639 ~ 33102873 (+)
G45108 NA non-coding downstream 117070 35050857 ~ 35057957 (+)
G45124 NA non-coding downstream 186292 35120079 ~ 35120344 (+)
G45129 LOC105030512,LOC106584099,LOC106569888,LOC106613431,LOC106573797,LOC106609167 non-coding downstream 207635 35141422 ~ 35142529 (+)
G45135 NA non-coding downstream 241448 35175235 ~ 35175446 (+)
G45150 NA non-coding downstream 293041 35226828 ~ 35227029 (+)
G45072 NA other upstream 818267 34114673 ~ 34114939 (+)
G45029 NA other upstream 1233661 33695592 ~ 33699545 (+)
AMCG00013516 NA other upstream 1484113 33442394 ~ 33449093 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other upstream 1520365 33376520 ~ 33412841 (+)
G44870 NA other upstream 1826611 33106292 ~ 33106595 (+)
G45174 NA other downstream 401103 35334890 ~ 35338052 (+)
G45209 LOC107575789 other downstream 721515 35655302 ~ 35659833 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other downstream 1126968 36060755 ~ 36085843 (+)
AMCG00013566 NA other downstream 1404475 36338262 ~ 36370087 (+)
G45338 NA other downstream 1469567 36403354 ~ 36403901 (+)

Expression


Co-expression Network