G45108


Basic Information

Item Value
gene id G45108
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 35050857 ~ 35057957 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU56200
aagtccccacgtagtctcctctgttccagggtgaaaagGTTCaattcctcagtctctcagtaggacattcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcgatatctttcttgaagtgtggagccctgaactgtacacagtatccagatgagctctaactagcgcattgtacagtctgaacatcactgcccttgttctcaattctacacttttgacaatataccctaacattgtgtttgccttttttattgcttccccacactgtttggatggagaaagtgaggagtccacatagactcctaggtctttctcatgcgttacttcatctagttctattcctcccatagtgtaattatagtggacatttttgttacctgcatgtaataccttgcacttgtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56200 True 424 lncRNA 0.44 2 35050857 35057957

Neighbor

gene id symbol gene type direction distance location
AMCG00013533 NA coding upstream 966740 34081183 ~ 34084117 (+)
AMCG00013532 zgc:172282,LOC107697541,LOC107758157,LOC107678250,LOC107555640,LOC107749639 coding upstream 991862 34057613 ~ 34058995 (+)
AMCG00013530 NA coding upstream 1356960 33670735 ~ 33693897 (+)
AMCG00013526 NA coding upstream 1381564 33664077 ~ 33669293 (+)
AMCG00013525 ppp5c coding upstream 1389084 33647849 ~ 33661773 (+)
AMCG00013540 gmfg,LOC105934520,LOC107090391,LOC103032687,LOC106520392 coding downstream 60452 35118409 ~ 35129062 (+)
AMCG00013539 med29 coding downstream 80392 35138349 ~ 35141343 (+)
AMCG00013543 NA coding downstream 156677 35214634 ~ 35217638 (+)
AMCG00013546 NA coding downstream 249407 35307364 ~ 35309555 (+)
AMCG00013545 NA coding downstream 268034 35325991 ~ 35331505 (+)
G45100 NA non-coding upstream 117070 34933206 ~ 34933787 (+)
G44983 NA non-coding upstream 1517702 33532772 ~ 33533155 (+)
G44954 NA non-coding upstream 1609693 33439835 ~ 33441164 (+)
G44871 map3k10,LOC102787573 non-coding upstream 1925408 33122020 ~ 33125449 (+)
G44869 NA non-coding upstream 1947465 33103167 ~ 33103392 (+)
G45124 NA non-coding downstream 62122 35120079 ~ 35120344 (+)
G45129 LOC105030512,LOC106584099,LOC106569888,LOC106613431,LOC106573797,LOC106609167 non-coding downstream 83465 35141422 ~ 35142529 (+)
G45135 NA non-coding downstream 117278 35175235 ~ 35175446 (+)
G45150 NA non-coding downstream 168871 35226828 ~ 35227029 (+)
G45162 NA non-coding downstream 221948 35279905 ~ 35280457 (+)
G45072 NA other upstream 935918 34114673 ~ 34114939 (+)
G45029 NA other upstream 1351312 33695592 ~ 33699545 (+)
AMCG00013516 NA other upstream 1601764 33442394 ~ 33449093 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other upstream 1638016 33376520 ~ 33412841 (+)
G44870 NA other upstream 1944262 33106292 ~ 33106595 (+)
G45174 NA other downstream 276933 35334890 ~ 35338052 (+)
G45209 LOC107575789 other downstream 597345 35655302 ~ 35659833 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other downstream 1002798 36060755 ~ 36085843 (+)
AMCG00013566 NA other downstream 1280305 36338262 ~ 36370087 (+)
G45338 NA other downstream 1345397 36403354 ~ 36403901 (+)

Expression


Co-expression Network