G45174


Basic Information

Item Value
gene id G45174
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 35334890 ~ 35338052 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU56293
TGTATGGCAGGCCTAGACTGGACTACCTCTAGATACCATCTGTGATATGACTACAGAAGAGCAAGTGATGTTTAATGACAGAGGGTCACATGCTGAGAGTGAAATTGAGGCAGAGGAACAAACAAATGACAGTCCCGACCTGATGTGCATATCGTGTCAGCAGGTATCGCCTGAAGTGCATAAGTGCGTGATCTGTGGTCAAATCTGTCATGCTATCCAACCCTGCAGTATTGCTATGGGTGACGAGGAGGGTTTCGGGGCACCTGTTATATGTTCTCATTGCCAGAGTGCCCAAAGTCGTCAAGAGCAACAGAGGGCAGCCAAGAGAAAGCAGGAGGACCAAGCTTGAAAGATGAAAGAGAACTCCAGAAAGCACTTTAAGGCTGCCTAGGCTGGCCAGTTCATCAGGGTCCCAGCTCCAGAGCTGGACTGTGGGAAGACGGATCCCTGTAACATCTTGGCTGTGACCGAGGATGGGTGCTACATATTTAGGACTAAAAATGGGGGTATTGAAACAAATGTACACCCAAAATCAGTTTGACCCTTGTGTCGAGTCATTCCTGAGCATCGCGGAGATTTAAAAAGACAAGGAGTTGTCATTGTGCCAGAACGCAAAAATATTGTGAGATGGAAATGGGCAAGGGTTTCAACTTTGCAACTGCAAAAACTCCACTTGATGTAACAATAAGATGTGCAATTGTAAAAGAAGAGGGCTTCTTTGTAACagcaaatgcatgttttaacaaCCTGTTGTAATAAGTAAGTAGGGCAGAGTAACCCATAAAGTAGAGCCTGCTTGTGAGCACTCCTGTATGTGTTGAATAGGGAAAATGCTTTTCAAGTTAATGCAATTAATAGTCAGATGACACTGTTGTATGGTAGAttatattatttgcatattatgttgtttttatttacaacatATGCAATTTTAGTTGTcgaaaaatgttttaataatttgtgtgttcattttacTAATCCAATGagcctgtttttgtttatctttaatttgaccTATATTAAATGAACTAAAAGCCTTTATACCGGTAGCTTCTTGTTTTTACATCAGCATTTCATCTGTTGTACCATTTAtcttaaaaaccaacaaacagtgattattgttaattaaaacgTGTCAAAGCAGCCTGTTCATTGGTTCTTCTGTTTATTGAGAAGATGAATAGTTTTACACTTGTCAAATGTGTCTGTATGAGTAGTTAGCAGACTATATGAAAAGATAAACAATGTGCTGGATTCACAATACATGATATTCAGTTTATGGAGTGGTCTTATTTCTGCCATTTAGTTTGCAGACTACAAAGTGGACTGGTCTTCAGGATAATGTTGGTATGGTGTTTCATTTCAGACATTAGCCTATGTAGTCCAATTTTGTCCTTATTCTGCATGTATTattgctaaaaatatatatttgacatgCAGCTGCAGTTTGGTGATCTGCATTTGATCAGATAGGTCTGTAGCCTATACGAAAATTCGTCCTACAAGCGATAATGAGCAAACACTTCAGTAGACGTCTAATGTGTGACAGGGTTAGGGTaactattaacatttttatgacTATTTTATGCATTATGATTGTAATTTCGGAGCAGTGCGATTGAGCGCACCTGATCTGGATCACAACTGTGAGTAGTAAAAGCACCTGACCTACTGCTGTTCAAATGTGCGTCCACATCAACCGGGAGATATACACATTTCCCGTGGCActggtaaatgtatacattccgCAACTAGACGGTAAAAGTATACATTTCCCAGtaaatgtacacatatacatttcccagaaaatgtatacatttcccaTGTTcacacatttactgtaacatatatatagtatatgtgACTGGTAAAACAGTGCTCTGCAATGTCTGGGGGGCTACAGCCGTTTTTTTATGCCATTACTGTCTTTAGATCAGGGTAAAAGGTAAAATTGGTTgagataaattaaaaatgttttatctaaATACAAGAACAGGTGGCATAATAACCCTGAGATTTGGCCATCCAGGAGTTGAACAGTCTGTTTCTGCAGCCTTTCCCTGGGTTACCCTTCAATGCTTTATTCCATCATAATAGAAATGGTACCTATAGTTAGCTGCATCTCCTGCTGTTCTAGAGCAGACCTGCATCAGAGAGGGGCAAATGACTACAATGGTTTTGTCCTGCAGTACTATAGCTGTCAGGCGACATCAGCAAAAGCCTGGTGGCACCTTCAGCAAGCTCCAGATTTCAGATGAAGACATATTTGTcacagttttatattttctatgCATTTCCTGaataatgcaatgttttgtcTGTCCACTTCCTTGTAGTGGAGGCAGTCACTTTCAAATCAATCCATGTTGGGAAAAATAGTGCAATAACAAGGGATTGtcatttattatctttttattttaatcataatagTAAGGACTGGAGCAGCAGGAATTCAATGCctgcttattttaaatgaatgatgcATGCAGTTGCACTAATGGCTCGTGTCTTTCTTCCATATGTGTCTTTCcctaaacaaattattttcttgcatggtttttaatgaaaaagatCAGTGGATTATGTTTGTGTTATGTTTGTCTCCTTcactttcaataaaaaacaatccaagACCGAATTGTCTTTTGCAAGCATGTCAAATTTCAGTTTCCCACTTTTACATACAAAGATTAAACTAACTAAAATAAagtctttatgtatttatttattttagcccAGGGACCTTAGTAGTGGATTCTGTATTGAGTGTAGGCAAAGTAGAGGAAATTGCACCTTAGAAATAAATCCTTCTGACCTTCTGGGTGTCTACTGAGGATGGCCTGAGACTGAGGTAAATTATATTCAGTCCATTATTCTTCTCAGACTTAATGGTTGGGTGATGCTCCTTTTGCATTTGAGTACAGTTGCTAAACATGGTTTGGCTGGATTTGCCAGtagatttttaagtttttaatccCTCCAAAGGCCTGTTACAGGGACATCACATTTCTCTAGGCCCACCCTGCATCGATTCACTTTCTGCATCATGTCTTCAGGACCACAGCAATAGTCATTTGTGAcctatggaaaagaaaaaacaaacaaaacaatcccaaAATTGCTACAATGCACCAGTAAAGCAATTTTGCACGGACAGGAAAGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56293 True 3163 TUCP 0.39 1 35334890 35338052

Neighbor

gene id symbol gene type direction distance location
AMCG00013545 NA coding upstream 3385 35325991 ~ 35331505 (+)
AMCG00013546 NA coding upstream 25335 35307364 ~ 35309555 (+)
AMCG00013543 NA coding upstream 117252 35214634 ~ 35217638 (+)
AMCG00013539 med29 coding upstream 193547 35138349 ~ 35141343 (+)
AMCG00013540 gmfg,LOC105934520,LOC107090391,LOC103032687,LOC106520392 coding upstream 205828 35118409 ~ 35129062 (+)
AMCG00013549 LOC101074320 coding downstream 468749 35806801 ~ 35814022 (+)
AMCG00013552 NA coding downstream 527733 35865785 ~ 35869903 (+)
AMCG00013556 NA coding downstream 561039 35899091 ~ 35908745 (+)
AMCG00013558 sptbn4,LOC106612708 coding downstream 759103 36097155 ~ 36111063 (+)
AMCG00013559 shkbp1,LOC106612709 coding downstream 781514 36119566 ~ 36132259 (+)
G45170 NA non-coding upstream 32109 35299872 ~ 35302781 (+)
G45162 NA non-coding upstream 54433 35279905 ~ 35280457 (+)
G45150 NA non-coding upstream 107861 35226828 ~ 35227029 (+)
G45135 NA non-coding upstream 159444 35175235 ~ 35175446 (+)
G45129 LOC105030512,LOC106584099,LOC106569888,LOC106613431,LOC106573797,LOC106609167 non-coding upstream 192361 35141422 ~ 35142529 (+)
G45207 NA non-coding downstream 212927 35550979 ~ 35551223 (+)
G45226 NA non-coding downstream 620055 35958107 ~ 35959584 (+)
G45227 NA non-coding downstream 630064 35968116 ~ 35968417 (+)
G45228 NA non-coding downstream 630617 35968669 ~ 35970696 (+)
G45229 NA non-coding downstream 635426 35973478 ~ 35973877 (+)
G45072 NA other upstream 1219951 34114673 ~ 34114939 (+)
G45029 NA other upstream 1635345 33695592 ~ 33699545 (+)
AMCG00013516 NA other upstream 1885797 33442394 ~ 33449093 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other upstream 1922049 33376520 ~ 33412841 (+)
G44870 NA other upstream 2228295 33106292 ~ 33106595 (+)
G45209 LOC107575789 other downstream 317250 35655302 ~ 35659833 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other downstream 722703 36060755 ~ 36085843 (+)
AMCG00013566 NA other downstream 1000210 36338262 ~ 36370087 (+)
G45338 NA other downstream 1065302 36403354 ~ 36403901 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other downstream 1282350 36620402 ~ 36646066 (+)

Expression


Co-expression Network