G45209 (LOC107575789)


Basic Information

Item Value
gene id G45209
gene name LOC107575789
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 35655302 ~ 35659833 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU56332
cctaatctcagctcgttacctgtataaaagacacctgtccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtagacctacacaaggctggaatgggctacaagaccatcgccaagcagcttggtgagaaggtgacaacagttggtgtgattattcacaaatggaagaaacacaaaataaatgtcagtctccctcggtctggggctccatgcaagatctcacctcgtggagtttcaatgatcatgagaacggtgaggaatcagcccagaactacacgggaggatcttgttaatgatctcaaggcatctgggaccatagtcaccaagaaaacaattggtaacacactacgccgtgaaggactgaaatcctgcagcgcccgcaaggtccccctgctcaagaaagcacatgtacaggcccgtctaaagtttgccaatgaacatct

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56332 True 495 TUCP 0.48 2 35655302 35659833

Neighbor

gene id symbol gene type direction distance location
AMCG00013545 NA coding upstream 323797 35325991 ~ 35331505 (+)
AMCG00013546 NA coding upstream 345747 35307364 ~ 35309555 (+)
AMCG00013543 NA coding upstream 437664 35214634 ~ 35217638 (+)
AMCG00013539 med29 coding upstream 513959 35138349 ~ 35141343 (+)
AMCG00013540 gmfg,LOC105934520,LOC107090391,LOC103032687,LOC106520392 coding upstream 526240 35118409 ~ 35129062 (+)
AMCG00013549 LOC101074320 coding downstream 146968 35806801 ~ 35814022 (+)
AMCG00013552 NA coding downstream 205952 35865785 ~ 35869903 (+)
AMCG00013556 NA coding downstream 239258 35899091 ~ 35908745 (+)
AMCG00013558 sptbn4,LOC106612708 coding downstream 437322 36097155 ~ 36111063 (+)
AMCG00013559 shkbp1,LOC106612709 coding downstream 459733 36119566 ~ 36132259 (+)
G45207 NA non-coding upstream 104079 35550979 ~ 35551223 (+)
G45170 NA non-coding upstream 352521 35299872 ~ 35302781 (+)
G45162 NA non-coding upstream 374845 35279905 ~ 35280457 (+)
G45150 NA non-coding upstream 428273 35226828 ~ 35227029 (+)
G45135 NA non-coding upstream 479856 35175235 ~ 35175446 (+)
G45226 NA non-coding downstream 298274 35958107 ~ 35959584 (+)
G45227 NA non-coding downstream 308283 35968116 ~ 35968417 (+)
G45228 NA non-coding downstream 308836 35968669 ~ 35970696 (+)
G45229 NA non-coding downstream 313645 35973478 ~ 35973877 (+)
G45230 NA non-coding downstream 314405 35974238 ~ 35984433 (+)
G45174 NA other upstream 317250 35334890 ~ 35338052 (+)
G45072 NA other upstream 1540363 34114673 ~ 34114939 (+)
G45029 NA other upstream 1955757 33695592 ~ 33699545 (+)
AMCG00013516 NA other upstream 2206209 33442394 ~ 33449093 (+)
AMCG00013515 dpf1,LOC107561370,LOC107749650,LOC107672425,LOC102781105 other upstream 2242461 33376520 ~ 33412841 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other downstream 400922 36060755 ~ 36085843 (+)
AMCG00013566 NA other downstream 678429 36338262 ~ 36370087 (+)
G45338 NA other downstream 743521 36403354 ~ 36403901 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other downstream 960569 36620402 ~ 36646066 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other downstream 1076844 36736677 ~ 36738479 (+)

Expression


Co-expression Network