G45228


Basic Information

Item Value
gene id G45228
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 35968669 ~ 35970696 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU56354
GTCTCACTTGGCTGTGATTTGGCAaccctgaaaaacaaacaaaaaatatcactGTAACACCCAGCTATAAAGGGATAAAGGGAGTGTTGATTATACAGCCAGTTTTTCACAGTGGATTGAGGTTCATTTCTAATGCTCCAAATTcttcattaacaaaacaaaaattaaaacagcattctTCTATGCAATTTCATATAGCGTGCAtAATTGATTTCAATCCCTGTTACAGGATTCATCCGTCAGCTAATTCTTCACTAACGTAGTGCTGTGATCTTCCGTAAGCTTCAGCTGTCGGAAGCCTTCAGACAAAAGAAGAAGGCCCTTTTCGCAAACACAGCAATGAAGGGTGGATCCCTATACAAGCAAATAAAAGCAATTGTAGACTGCAGAATATGAAACAGGGCAATGAAGGGATTCAAGCTAGTTACAACAAACTGAGAGACAACAGAACAGGTAATTTCCTTACCTCTGGAAGGCATCAGTAACCGTTTCTTCATATGGcctagcacacacacacccaCACCTTCTATGCCGTTGTGTTGCTCATAGCTGCGTTTGCCCAGGATGGTAGTGGAGCCGTGGTTGATGACGGGTCCCACCTTGGCTACGCTGGCACTCACTGGATGTGGCGCGAGGCTAATGGCAGGTTTCACTGGCTCGGGTTTTACGTACGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56354 True 675 lncRNA 0.44 3 35968669 35970696

Neighbor

gene id symbol gene type direction distance location
AMCG00013556 NA coding upstream 59924 35899091 ~ 35908745 (+)
AMCG00013552 NA coding upstream 98766 35865785 ~ 35869903 (+)
AMCG00013549 LOC101074320 coding upstream 154647 35806801 ~ 35814022 (+)
AMCG00013545 NA coding upstream 637164 35325991 ~ 35331505 (+)
AMCG00013546 NA coding upstream 659114 35307364 ~ 35309555 (+)
AMCG00013558 sptbn4,LOC106612708 coding downstream 126459 36097155 ~ 36111063 (+)
AMCG00013559 shkbp1,LOC106612709 coding downstream 148870 36119566 ~ 36132259 (+)
AMCG00013564 LOC106612713,LOC106580732,LOC105023074,LOC108435511 coding downstream 410273 36380969 ~ 36403018 (+)
AMCG00013568 NA coding downstream 464190 36434886 ~ 36444730 (+)
AMCG00013567 NA coding downstream 492156 36462852 ~ 36476392 (+)
G45227 NA non-coding upstream 252 35968116 ~ 35968417 (+)
G45226 NA non-coding upstream 9085 35958107 ~ 35959584 (+)
G45207 NA non-coding upstream 417446 35550979 ~ 35551223 (+)
G45170 NA non-coding upstream 665888 35299872 ~ 35302781 (+)
G45162 NA non-coding upstream 688212 35279905 ~ 35280457 (+)
G45229 NA non-coding downstream 2782 35973478 ~ 35973877 (+)
G45230 NA non-coding downstream 3542 35974238 ~ 35984433 (+)
G45276 NA non-coding downstream 143359 36114055 ~ 36117331 (+)
G45301 NA non-coding downstream 189438 36160134 ~ 36187942 (+)
G45343 NA non-coding downstream 435347 36406043 ~ 36408735 (+)
G45209 LOC107575789 other upstream 308836 35655302 ~ 35659833 (+)
G45174 NA other upstream 630617 35334890 ~ 35338052 (+)
G45072 NA other upstream 1853730 34114673 ~ 34114939 (+)
G45029 NA other upstream 2269124 33695592 ~ 33699545 (+)
AMCG00013516 NA other upstream 2519576 33442394 ~ 33449093 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other downstream 90059 36060755 ~ 36085843 (+)
AMCG00013566 NA other downstream 367566 36338262 ~ 36370087 (+)
G45338 NA other downstream 432658 36403354 ~ 36403901 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other downstream 649706 36620402 ~ 36646066 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other downstream 765981 36736677 ~ 36738479 (+)

Expression


Co-expression Network