G45230


Basic Information

Item Value
gene id G45230
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 35974238 ~ 35984433 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU56356
agagagagaaaaagtccTGTCGCTTTAAGTGTTATGGCACCCTGGGATTTGTAGGTGTTTGGAGTTTTGGTTTTACCTTTGGTTTGTAGCGCAATCAGAACACAAGAAAACTCAAAATTCCATAATGCATCACTTTTCGCGTAACTACAGTCGGGGGCCGTGCATTAGAGTGTGGCTTTAATCACGGAGGTGCGAAAGTGTATGAGGACTCGCGAGTGAAAGAGCACTGAGGCTGAACAGAGACCCCCAGAGACGCTTTTCACTCTTTCTTTCATGGTCATTCCCATTCGGAGGCcgtattgttttatattttagagcCGTTTcaattttattcaatacagtagcACCTTTCCAGAAGGCTGGGAGGCCATCATTTTGTTTGCCAAATGTGCAGAAATTGTCCTGCATTCCTGCAGCCCACAGTTAAAACGTTTAGCGAAACCAATATGactacaaaagaaagaaaggaaatttGTGTTGTTCTAAACACGGTACGCCTGAGTTTGAGGTATGAAAACAGTGCTTCTGTCTCGTTCAAAAGGGTGACACAGCATTTTCCCCTAAAGAGGAAAAAGCCATGGAAACCATCATGGGGTGTAAGAGATTAAatatgatatgtttttttttctttgcaccAGACCAGCAAATATTCcttaatgcatgttttatttagagtttttaaaatgtgcatataCCATTATTTTAGAACATATGCTACTGTGAATGCTACATTCTACCTTAAAGCTTCCACAGCATGGAAGCATAAAATGTCACTGATATTCTCCTTTCCCAAggacatacataaaaaaaaagaaaaaaaagcaaatgtccTCCAAGGAGACATTACCTAATATATAACTTGCATGAATGCATTCCTGTAAACATAAGGCAATGTTGATACATATCCCAACCAATCATTTTCATAATGTGGACACCAGCTTCAATGTAAGACCAGTGTTTGAATTgagacaatgaaaataaattaattaattaataattaaataaacacaaatatatacttataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56356 True 1025 lncRNA 0.37 3 35974238 35984433

Neighbor

gene id symbol gene type direction distance location
AMCG00013556 NA coding upstream 65493 35899091 ~ 35908745 (+)
AMCG00013552 NA coding upstream 104335 35865785 ~ 35869903 (+)
AMCG00013549 LOC101074320 coding upstream 160216 35806801 ~ 35814022 (+)
AMCG00013545 NA coding upstream 642733 35325991 ~ 35331505 (+)
AMCG00013546 NA coding upstream 664683 35307364 ~ 35309555 (+)
AMCG00013558 sptbn4,LOC106612708 coding downstream 112722 36097155 ~ 36111063 (+)
AMCG00013559 shkbp1,LOC106612709 coding downstream 135133 36119566 ~ 36132259 (+)
AMCG00013564 LOC106612713,LOC106580732,LOC105023074,LOC108435511 coding downstream 396536 36380969 ~ 36403018 (+)
AMCG00013568 NA coding downstream 450453 36434886 ~ 36444730 (+)
AMCG00013567 NA coding downstream 478419 36462852 ~ 36476392 (+)
G45229 NA non-coding upstream 361 35973478 ~ 35973877 (+)
G45228 NA non-coding upstream 3542 35968669 ~ 35970696 (+)
G45227 NA non-coding upstream 5821 35968116 ~ 35968417 (+)
G45226 NA non-coding upstream 14654 35958107 ~ 35959584 (+)
G45207 NA non-coding upstream 423015 35550979 ~ 35551223 (+)
G45276 NA non-coding downstream 129622 36114055 ~ 36117331 (+)
G45301 NA non-coding downstream 175701 36160134 ~ 36187942 (+)
G45343 NA non-coding downstream 421610 36406043 ~ 36408735 (+)
G45373 NA non-coding downstream 629302 36613735 ~ 36613942 (+)
G45395 NA non-coding downstream 714365 36698798 ~ 36700063 (+)
G45209 LOC107575789 other upstream 314405 35655302 ~ 35659833 (+)
G45174 NA other upstream 636186 35334890 ~ 35338052 (+)
G45072 NA other upstream 1859299 34114673 ~ 34114939 (+)
G45029 NA other upstream 2274693 33695592 ~ 33699545 (+)
AMCG00013516 NA other upstream 2525145 33442394 ~ 33449093 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other downstream 76322 36060755 ~ 36085843 (+)
AMCG00013566 NA other downstream 353829 36338262 ~ 36370087 (+)
G45338 NA other downstream 418921 36403354 ~ 36403901 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other downstream 635969 36620402 ~ 36646066 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other downstream 752244 36736677 ~ 36738479 (+)

Expression


Co-expression Network