G45276



Basic Information


Item Value
gene id G45276
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36114055 ~ 36117331 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU56419
AtgctacttttatttatttatttatttatttatttatttattttccacttgaGGGTGTAAGGCTTTGTATGTTTCTTCTGTGTATGTCGGTCCAAGACTTAAGTGAGCGCTCGCAAATATGTGAAGCTCTATTTGCAAACggcatttaaaaatgcaactcTAGTTTATTCAAACTCTGCAGTAATCACACTCACGACACCTTTGGGAGTTTTGGGTGTGCTTAGGAGAAATATTCCATGCAGAATTTAGTGTACATTAAgttaacatttttcacattttaacaggAACACTTGAAGTGTTAacttatacatatttatattttgagaaaGTCAGCAAGCCACAGGTGTATAGTGACTGCAAAGCTGCTGACACCACTCTCAAATAGTAGTATTGATGGGTACTACAATAGCATCTCATTGGTATAAGTGGAAGGAAACAAAACCGATGTAAAGGCTGAACTCTTTCACACTATGTGTTCTTTAATTCAAAGGTTACTGGCCCTGTCTAGCAATCTGTAAATAACATGtaacacagatttaaaaatgaaacaaaacaaaaaagacatacTTTTTTTCCACCAAGCACATTCCTGTCAAAATggtggaaataataataataaaaaaataaatgcatcatacTGTATTCAAGAGTTggcctttttaaaattgtatttctgtttggaAATGATGCTCAATACCTTGCATtgttgtactttatttatttatttgtccttgtttatattgttcttgatacaatgtttttttttcacagtattttttCTGAAAGCCGATGTTATGCAGTAGAACTGTCTTAGTCCTGTTGAATTGATGAGGAAGATGCCACAAATAATAGTGAtaaaatgaatagaaaatatTATGCAACTTTTCCTTTGCACTAAAAAAGCGCTACCCCATTGCACAGTGCTAATGCCTGCAAAGCAATGGTGATGCAGGTTCAACCGAAAGGAGATTTTTTGAACTGATGGATTGAATCCAATTAGCATTTTACTTTATCTGTAATGGAAGGAAGTGTGTTCTCATTTTTTGTTCTGATAAGGAAtgaaagtgttgtttttctttacatagtTTTAAACTAGCAAGGCACACCATACTGTTTTAACAGATGCTGTACAATGAACATCTGCTGTGAGATTTCTCTTTTTACGGTGCATGTTAATGTGTGTCAACTCAAAACCACTCAGTGGAACaagcattttattatgttaGAATTTCTAACATACTTAAAAGGAAtaataggtttattttttcatgaatcAAAAAAGCTAAAGGAATTTAAGGAATTATAGCACCAGAATGTTAGTGGTTGGGCATTAAGTGACAGATACTAGGTTTGGATCATCCTGCTGAACAAAAAGGCCACTTGTTTCCATTGTCcaactttcttttttatagtttcttaattaatagacatttcattgtttttgtagatTGAATTACCTTATTTCAAGCAACTTAAAACCTGAAACCTAACTTAAACATAACAGTGCTGTGAATTATATATCACTTTGGAGCTTCTGCAGTTGAAAAGCAAATAACAGAACTAGTTGGCTCTCTTATTTTCCACCATTCTGGTTTGgtggcatttaaaaatagcaacatGTGGGCAGCCACAGTACATTAGTTGTAGATATAGGAAAAGAAAGGGCTAGCACAAATCTTGTCTGCTTGTTTGAGGTGGTGGCCTTGCTTTGTGTTTAGTTCTGCCATGCATACCCCCCGTCCCCCtccgcacacacacatttgtttccttttcctcATAGAAAAGGTAATCTGTATCTTACTAAAGCAGAGTATAGCTAATGAAGGGAAAGCACAATTTTTATAACTATGTGTAGAACAAATGACCAGCAGACTCCCCAAAAGAGTAGTTTAACCCCCAGAAGTGCCACTTCCTGTcagggaaaaacagaaaatgcattgaTGGTTCCTAGctgttattttacagaaaataaataaacaagaaaaaaatattcttcagTAAGGCATATCTATTTGTATTGCTGCCTTTGCTTTTTAGGATTTTTCATGTCCAGTCTGGGTGGTACACTGTAATCTCAGTTACTGCCACTAGGTGCCACTGCAACCTTCAGTAATCACttgaaatctaatttaatttaagaccTAGAGCACCATCTACTGAGACTAAAGCTctgtaattgaataaataaagagcTTTACAGCCTGGATTGCAACTGTTTCTCCTGTTTACACACATATGACACATCAATAAGCAGAATGATAGATGAGTGTGTTCATAAAATGAACACAGTTTTGCGCCATTCAGGCCTGTAAGGATGTCATGTGCTTAAGAGGACAAGAGAAGATGTTCTAGACCAAGCCTTAAGCAATAGAACAGGGATTcaaaaacgaacaaacaaataatcaaaaaaataaCCAGGCTGTGTTATGTCTTTGGGACCTCTACTAGGTGCAAAACGTCTCTCTGAAGTAATTCTTCTATTTGGTCTGGACAGCCAGGGTTcaggaaattatatttgatcttaaatacattttcttctgaaCAAGACAAGCGTTTAAATTACTATACAGGTCTGAAGGAAGAGCGGATGCCCCGAAGATAATCGTGAGTTAGGTAATACAGTATTAGGCAGTTCATTATCATTGTCCTTATACACTGTCCTGCTTCagctaaaataatataataactttATTGGCTTGgctgtatatatgaatgtatgtgtatgtgtgtgtgtgtgagtaattTAAATCACTACTTATTTCTTCGAGGACTAATTGAACCCTGCAGCACCATTGCTTTTGAAGTGAATTACTGATTTTTTGCAAAGCTCAAAAGCTAAATGacctgtataaaatgtaattgcttaaaatattttctgtaaagaaaaaaaaaaaaactaccatttctttcttccttatttccttcatttgtttttctgctgtaaaacattttaaaaaaatgttaatgaatttTAACCAATTTAACgatcagattaaataaatggggaaaattaatttatttgtaaaaaaaaaaaaaaaaaaatcaggagaaaaaaaagttgcatGGATTAGTATTAAGTCCCTATTACTGAATCgctgtgcatgtttttaaacagttttatcCCCCTGCTATACAATCACTGTACAATAAAGGGTTGGGGTGACACATGTAAGTAAATGGAAATAATGAATGAGTGAATAATGATGTATAAAATAGATCAGACCTTACAATCAATCATTGCCTCTGTACAGTTATCTCCGTGaattgataaatacaa

Function


GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU56419 True 3277 lncRNA 0.34 1 36114055 36117331

Neighbor


gene id symbol gene type direction distance location
AMCG00013558 sptbn4,LOC106612708 coding upstream 2992 36097155 ~ 36111063 (+)
AMCG00013556 NA coding upstream 205310 35899091 ~ 35908745 (+)
AMCG00013552 NA coding upstream 244152 35865785 ~ 35869903 (+)
AMCG00013549 LOC101074320 coding upstream 300033 35806801 ~ 35814022 (+)
AMCG00013545 NA coding upstream 782550 35325991 ~ 35331505 (+)
AMCG00013559 shkbp1,LOC106612709 coding downstream 2235 36119566 ~ 36132259 (+)
AMCG00013564 LOC106612713,LOC106580732,LOC105023074,LOC108435511 coding downstream 263638 36380969 ~ 36403018 (+)
AMCG00013568 NA coding downstream 317555 36434886 ~ 36444730 (+)
AMCG00013567 NA coding downstream 345521 36462852 ~ 36476392 (+)
AMCG00013573 LOC107548551 coding downstream 574821 36692152 ~ 36693141 (+)
G45230 NA non-coding upstream 129622 35974238 ~ 35984433 (+)
G45229 NA non-coding upstream 140178 35973478 ~ 35973877 (+)
G45228 NA non-coding upstream 143359 35968669 ~ 35970696 (+)
G45227 NA non-coding upstream 145638 35968116 ~ 35968417 (+)
G45226 NA non-coding upstream 154471 35958107 ~ 35959584 (+)
G45301 NA non-coding downstream 42803 36160134 ~ 36187942 (+)
G45343 NA non-coding downstream 288712 36406043 ~ 36408735 (+)
G45373 NA non-coding downstream 496404 36613735 ~ 36613942 (+)
G45395 NA non-coding downstream 581467 36698798 ~ 36700063 (+)
G45397 NA non-coding downstream 587321 36704652 ~ 36704893 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other upstream 28212 36060755 ~ 36085843 (+)
G45209 LOC107575789 other upstream 454222 35655302 ~ 35659833 (+)
G45174 NA other upstream 776003 35334890 ~ 35338052 (+)
G45072 NA other upstream 1999116 34114673 ~ 34114939 (+)
G45029 NA other upstream 2414510 33695592 ~ 33699545 (+)
AMCG00013566 NA other downstream 220931 36338262 ~ 36370087 (+)
G45338 NA other downstream 286023 36403354 ~ 36403901 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other downstream 503071 36620402 ~ 36646066 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other downstream 619346 36736677 ~ 36738479 (+)
G45439 NA other downstream 757576 36874907 ~ 36877603 (+)

Expression



Co-expression Network