G45301


Basic Information

Item Value
gene id G45301
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36160134 ~ 36187942 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU56449
ggtgatgatgaagtaaaaacaaatatatatatagactaaAATGCGAGTACAATTACACTGACTAAAACTAGATTACAATTACAGGAGTTTTCGTCGACAAGGTTGTAAGCgttgtggcttcacaaatgctttgctgcatacctcggttgtaacgagtggttatttcagtcaaagttgctcttctatcagcttgaatcagtcggcccattctcctctgacctctagcatcaacagaACTGctgcatactggatgtttttcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccagcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatatatatacacacacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56449 True 581 lncRNA 0.40 3 36160134 36187942

Neighbor

gene id symbol gene type direction distance location
AMCG00013559 shkbp1,LOC106612709 coding upstream 27875 36119566 ~ 36132259 (+)
AMCG00013558 sptbn4,LOC106612708 coding upstream 49071 36097155 ~ 36111063 (+)
AMCG00013556 NA coding upstream 251389 35899091 ~ 35908745 (+)
AMCG00013552 NA coding upstream 290231 35865785 ~ 35869903 (+)
AMCG00013549 LOC101074320 coding upstream 346112 35806801 ~ 35814022 (+)
AMCG00013564 LOC106612713,LOC106580732,LOC105023074,LOC108435511 coding downstream 193027 36380969 ~ 36403018 (+)
AMCG00013568 NA coding downstream 246944 36434886 ~ 36444730 (+)
AMCG00013567 NA coding downstream 274910 36462852 ~ 36476392 (+)
AMCG00013573 LOC107548551 coding downstream 504210 36692152 ~ 36693141 (+)
AMCG00013570 NA coding downstream 521433 36709375 ~ 36712969 (+)
G45276 NA non-coding upstream 42803 36114055 ~ 36117331 (+)
G45230 NA non-coding upstream 175701 35974238 ~ 35984433 (+)
G45229 NA non-coding upstream 186257 35973478 ~ 35973877 (+)
G45228 NA non-coding upstream 189438 35968669 ~ 35970696 (+)
G45227 NA non-coding upstream 191717 35968116 ~ 35968417 (+)
G45343 NA non-coding downstream 218101 36406043 ~ 36408735 (+)
G45373 NA non-coding downstream 425793 36613735 ~ 36613942 (+)
G45395 NA non-coding downstream 510856 36698798 ~ 36700063 (+)
G45397 NA non-coding downstream 516710 36704652 ~ 36704893 (+)
G45403 NA non-coding downstream 531710 36719652 ~ 36719989 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other upstream 74291 36060755 ~ 36085843 (+)
G45209 LOC107575789 other upstream 500301 35655302 ~ 35659833 (+)
G45174 NA other upstream 822082 35334890 ~ 35338052 (+)
G45072 NA other upstream 2045195 34114673 ~ 34114939 (+)
G45029 NA other upstream 2460589 33695592 ~ 33699545 (+)
AMCG00013566 NA other downstream 150320 36338262 ~ 36370087 (+)
G45338 NA other downstream 215412 36403354 ~ 36403901 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other downstream 432460 36620402 ~ 36646066 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other downstream 548735 36736677 ~ 36738479 (+)
G45439 NA other downstream 686965 36874907 ~ 36877603 (+)

Expression


Co-expression Network