G45338


Basic Information

Item Value
gene id G45338
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36403354 ~ 36403901 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU56506
tttgccttcaaaacagcatcaattttgtatgcatatagtcaggtgtatgattaaacaattataccaaatcggtgctaatgatcattcattcaatatgtaggttgaaacccAGTCATTAACtgacacagaaacagctgtgtaggaggaataaaactcgGTGAGGagcagccaaactcagctaacaaggtgaggttgctgaagacagtttactgtcaaaagtcatacaccatggcaagaccaagcacagcaacaagacacaaggtagttatactgcatcagcaaggtctctcccaggcagaaattcaAGGCAGatgggtttccagatgtgctgtccaagctcttttgaagaagcacaaagaaacgggcaacgttgaggatcgtagacacagtggtcggccaaggaaacttactgcagcagatgaaagacacatcatgcttacttcccttcacaatcggaagatgtccagcagtgccatcagctcagaattggcagaaaacagtgggaccctagtacacccatctactgtcagGAGAaatctggtcagaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56506 True 548 TUCP 0.44 1 36403354 36403901

Neighbor

gene id symbol gene type direction distance location
AMCG00013564 LOC106612713,LOC106580732,LOC105023074,LOC108435511 coding upstream 336 36380969 ~ 36403018 (+)
AMCG00013559 shkbp1,LOC106612709 coding upstream 271095 36119566 ~ 36132259 (+)
AMCG00013558 sptbn4,LOC106612708 coding upstream 292291 36097155 ~ 36111063 (+)
AMCG00013556 NA coding upstream 494609 35899091 ~ 35908745 (+)
AMCG00013552 NA coding upstream 533451 35865785 ~ 35869903 (+)
AMCG00013568 NA coding downstream 30985 36434886 ~ 36444730 (+)
AMCG00013567 NA coding downstream 58951 36462852 ~ 36476392 (+)
AMCG00013573 LOC107548551 coding downstream 288251 36692152 ~ 36693141 (+)
AMCG00013570 NA coding downstream 305474 36709375 ~ 36712969 (+)
AMCG00013574 irf2bp1,irf2bpl,LOC106580746,LOC108443036,LOC106612697 coding downstream 390140 36794041 ~ 36797976 (+)
G45301 NA non-coding upstream 215412 36160134 ~ 36187942 (+)
G45276 NA non-coding upstream 286023 36114055 ~ 36117331 (+)
G45230 NA non-coding upstream 418921 35974238 ~ 35984433 (+)
G45229 NA non-coding upstream 429477 35973478 ~ 35973877 (+)
G45228 NA non-coding upstream 432658 35968669 ~ 35970696 (+)
G45343 NA non-coding downstream 2142 36406043 ~ 36408735 (+)
G45373 NA non-coding downstream 209834 36613735 ~ 36613942 (+)
G45395 NA non-coding downstream 294897 36698798 ~ 36700063 (+)
G45397 NA non-coding downstream 300751 36704652 ~ 36704893 (+)
G45403 NA non-coding downstream 315751 36719652 ~ 36719989 (+)
AMCG00013566 NA other upstream 33267 36338262 ~ 36370087 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other upstream 317511 36060755 ~ 36085843 (+)
G45209 LOC107575789 other upstream 743521 35655302 ~ 35659833 (+)
G45174 NA other upstream 1065302 35334890 ~ 35338052 (+)
G45072 NA other upstream 2288415 34114673 ~ 34114939 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other downstream 216501 36620402 ~ 36646066 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other downstream 332776 36736677 ~ 36738479 (+)
G45439 NA other downstream 471006 36874907 ~ 36877603 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other downstream 707867 37111768 ~ 37122611 (+)
AMCG00013595 NA other downstream 911312 37315213 ~ 37327711 (+)

Expression


Co-expression Network