G45343


Basic Information

Item Value
gene id G45343
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36406043 ~ 36408735 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU56511
acagtgaCTTGTTGCTTCAGTAAACATTGTCACCAATGTAATCATTATGATTTGGTGCTAGATATttgttaaactaaaataatacttcaataaataacaaacatacatggcatgtttattaatttaatattgcaatatttcaATATCCCCTTAACAGGGCAATGaaaacaaccaacaacaacCATAATAAAGTACATGcatacaagaaacaaaattaaataaacctaGCAATTAAACATTTAGGATTATGCCTTACTTCGAAGTTTTCTTATTAAATCAGGTCTATATCAGTCAATTGATTTGAGGTAAATGactgcattataaaaaaaaaaatgtttaacaacACAGGACTAGTTCAGTTTctgttcattaatttaacattcTTTTTCAAGTACCTGGATATAAAACgcaagaaaagagagagatgagagaagAACAATTGGTGTACTTATCATTTCAGATCTTTCTGTGCCAACACGCATACAATGATCAGTATTTTATCCAGCTACACAAAATATTACAtacccaaataaaaaaattcttAGGCTAAAAGGGTGAggttatttatctttaaaagtataaataaactAACCCAGGTACCCAATGTAGGGATTGCATTTGCCATTGTTTCtggcttttcaaaataaattaaaaaagcaccaaataactaaataataatttaaactggtTATTCTCCCTCTGGCCAACCTCTTACAGTACAGCAGTAAGATAACTGCAAATTCTTTATTGAACATACCTTCACTCTCTGAGCCACTAGATGACACTAGAAGcacttcataaaatgtataacaaatttGAAGTAGGAACTTTTAGGAAAGCCAACTTTAATTATTAGCaactaatacaattattaattattattatcatacaGTTATGAACAGATTTGAACAAATACAATCAAACTGTACATAAACACAAGGCACATAGTCAACTATAAGAGTATTGTCGTAAAGCTTCATTCAGCAGTGTTTACCTCTTTCATAGGGAAGTTACTGATGTAATTATACTTCTTGCCAACTTATTCTTCATAGAAGACAAGAATCACACGAGGAAACAAGATACACTCTAGCATTCCTTGGGTCTTCTAATTTTACGGACTCCTATACAAGATCCTTGAACAGGGCATATGCAACATGCCAGCAGTTGTAGAATTAGCGATATTGAAAAAACACCACCTTTTTGTGCCCAGATTTGACTTCTGTTGTTTGCATGatttcttttaacatttcaagagattctaactgaaaataataataatgacaaaaataaaatactttagggataaaaaaaaaagaacttgagTTAAAATGATCAGTCTGATGGTAGCTTCTTAAATGAACCCTCTTCTGCCTAGCATGTGATTTACCATTCCTTTGTTGGGTGCTGTCAATGTTGTCATTAGGAAAATGTGGTTAAAATTAACAGGAAATGGAGAGAAGCTAACAAAAAAGAAGCCAGTTCAGTGATTACAGATAATATTCTTCTcccaaaatgaattaattcaattaattctcTGTAATGTCAGTTACACCCTTTTCAGCAGATTGGACTTTCATTAATGTTTTGCTACAATGATAACAGATCTGTGGAATACAGTACCTGGTTTTAGGGTGAAAATCCCCCAATACTGACAGTATAACTTAATATCAAAACTCCTCCACCTCCACTATCATTTCTGGCCGCCCAGTGTTCACTGAACAGCTTTCCCACTACATAATATTGACATGGTTTCCCATCATGCCCCGGGACCGCACAAAGGCTTGCCGGTGTTGTACTTTCAAAAGGCACTAATCTGTCAGATGCTCAGTGGACAACAAGCCAAAAAAGAAAGACCTTCCACATCCTGTCTAATCTACTTAAATCTGTCACCAAAATGCAGCTAATTAGACTGCGCCGTCTGGCTTTTCCTCAGTGTTCTCAGAATtttgtgtgcgagagagagagagatttaatcACGGTACTTCTGCACTTATTGATACATAGTGGTTATGGCTCTGCCTCCAAACTTAAGCTGTACAACAAGTTTCTTTCTGTGTATGTAGTGAAACTAATACATATAACAGTATGTGCACAGAATTAAAGTAATATTCACTGTTCAAGAGGTGTGCTTTagaaacccccccaaaaaaggttGTTTCAGATTAAACCAGTCAGGCTGCCACATAacttccaaaacattttaaaatggcttaCTTTGATCTTtggtttaaaaacagaacaatgaaATGATGCTAGATTGGGTTTACATTTGTGtccttgagagagagagtaaaaatCAGGCAGGGAGGAGAATATAGGAGTTGTGCATGGCCCATTGTGATTGGTGCTTCCCAACGGCGAGTTCCAGCCCGCTCAATTAGGAGCTATCTGTTGATGGAGCTGTAGGAAACCTGGGAGTTGACGTCTAGGGGTTTGCGGGCCACTTTGTCCGTTTCGTTTGAACTGTCCTGAATGGCATTGACGATCGGCTCCTCGTCCTCATCTTCCTCGCAGTGGGGCAGGTGGAAGAAAGACGTGAGCCCGTACAGATCTGCGAGCTTGTGGAAGGTGCGTAGGAGCAGGAACATCCCCATCAGTCCCAAGAACAGG

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU56511 True 2610 lncRNA 0.36 2 36406043 36408735

Neighbor

gene id symbol gene type direction distance location
AMCG00013564 LOC106612713,LOC106580732,LOC105023074,LOC108435511 coding upstream 3025 36380969 ~ 36403018 (+)
AMCG00013559 shkbp1,LOC106612709 coding upstream 273784 36119566 ~ 36132259 (+)
AMCG00013558 sptbn4,LOC106612708 coding upstream 294980 36097155 ~ 36111063 (+)
AMCG00013556 NA coding upstream 497298 35899091 ~ 35908745 (+)
AMCG00013552 NA coding upstream 536140 35865785 ~ 35869903 (+)
AMCG00013568 NA coding downstream 26151 36434886 ~ 36444730 (+)
AMCG00013567 NA coding downstream 54117 36462852 ~ 36476392 (+)
AMCG00013573 LOC107548551 coding downstream 283417 36692152 ~ 36693141 (+)
AMCG00013570 NA coding downstream 300640 36709375 ~ 36712969 (+)
AMCG00013574 irf2bp1,irf2bpl,LOC106580746,LOC108443036,LOC106612697 coding downstream 385306 36794041 ~ 36797976 (+)
G45301 NA non-coding upstream 218101 36160134 ~ 36187942 (+)
G45276 NA non-coding upstream 288712 36114055 ~ 36117331 (+)
G45230 NA non-coding upstream 421610 35974238 ~ 35984433 (+)
G45229 NA non-coding upstream 432166 35973478 ~ 35973877 (+)
G45228 NA non-coding upstream 435347 35968669 ~ 35970696 (+)
G45373 NA non-coding downstream 205000 36613735 ~ 36613942 (+)
G45395 NA non-coding downstream 290063 36698798 ~ 36700063 (+)
G45397 NA non-coding downstream 295917 36704652 ~ 36704893 (+)
G45403 NA non-coding downstream 310917 36719652 ~ 36719989 (+)
G45405 NA non-coding downstream 319215 36727950 ~ 36729956 (+)
G45338 NA other upstream 2142 36403354 ~ 36403901 (+)
AMCG00013566 NA other upstream 35956 36338262 ~ 36370087 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other upstream 320200 36060755 ~ 36085843 (+)
G45209 LOC107575789 other upstream 746210 35655302 ~ 35659833 (+)
G45174 NA other upstream 1067991 35334890 ~ 35338052 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other downstream 211667 36620402 ~ 36646066 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other downstream 327942 36736677 ~ 36738479 (+)
G45439 NA other downstream 466172 36874907 ~ 36877603 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other downstream 703033 37111768 ~ 37122611 (+)
AMCG00013595 NA other downstream 906478 37315213 ~ 37327711 (+)

Expression


Co-expression Network