G45395


Basic Information

Item Value
gene id G45395
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36698798 ~ 36700063 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU56565
TAGTGGCAAGCTATTACCTCAGAAGGCAGTTCTACTGTATCTATAATTACTCCCTGTATAATTTACCCAGTGCGTATGATTTAATCTTTCCTGCTAAAAACCCCCAACAGTAGctgaatacagttttaaaacaacaaaacaaagaatgtaTACAAACCCAGCCCCCACTCTATCCCACTTTTATgcttaaaaattacaaatgttcCTATCTGAATGCATGATCTCCGCAAATAACTGATAGCAAATAAGATGGAATGTTCCACATAGCACCAAGATTGAGGAAGCAATTTGTATTTGGGCAGCTATGTACTATCCcccaacatttattttgtattattcctaAAGTGAAGCCATGAGtgggcagggtggggggggtctgtTTCAGTACAACTTGTAATCAAAGGCTTTTcatcaccttttctttcttttcaatgtCTTCATCCTCAGCAGTGTGCACTACTGTCCAGCTAAGAAGAATTCTCTTAAAAGAACTGTGCTTGAGTAAAACCTCAACTATTGGTATTAGGTGATTAAATACTATTCCCTTTGTGGTACTCCAGACTGTATGGGAAAACACCACCCACCACACCAAATCTATTTCCTTTCTTAGAAAGAGGCAGCTTTGTTTGCCACTATTTGTTCCTTAATTTTTCTTGGCACACATAACAGCAGTGGTCATACACACAGAAACTAAAGGCGTGAAAACAGTgattaaattgctttttttgtctgtgattgtttgtctgttttgtttgaatgaGCCTTCTTGAAAGACTATATATCCGCctagaaatacaattattaaactCGTTTTTGTGAGACCTGAGGAATGAAACCGAATGCCTAAATTATGTGTAACTAATGGTATTTAATAGTTCCTTACTAGACCATCATTAGCAATTTTAATACAACTTCATTGTTCAGCTTTATTTTGAGTTACTGGTGATGCTTTAAACAGAGATGGTACTATTGAGAACCACTGAAAACTGTGCATAATTACAATTCCTAttcttgcatacattttttatatatatattaggatgAAGCTgttcagtaaaattaaaatcatccACTTGACTGTGATTCCACTGGCTTTGTTTTGTGGTCTTTCTTGAATCTTTGtctgatttgtttgtgtgttttgttttcatttgttgttttttgtagcaGTATTGGAAACACAGGTTTCTGTTTCCAATCAGCAACCACcacaaaaagataaagaaaattatttcttatttgttcaATGCTGTAGAGGAGagggtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56565 True 1266 lncRNA 0.36 1 36698798 36700063

Neighbor

gene id symbol gene type direction distance location
AMCG00013573 LOC107548551 coding upstream 5657 36692152 ~ 36693141 (+)
AMCG00013567 NA coding upstream 222406 36462852 ~ 36476392 (+)
AMCG00013568 NA coding upstream 254068 36434886 ~ 36444730 (+)
AMCG00013564 LOC106612713,LOC106580732,LOC105023074,LOC108435511 coding upstream 295780 36380969 ~ 36403018 (+)
AMCG00013559 shkbp1,LOC106612709 coding upstream 566539 36119566 ~ 36132259 (+)
AMCG00013570 NA coding downstream 9312 36709375 ~ 36712969 (+)
AMCG00013574 irf2bp1,irf2bpl,LOC106580746,LOC108443036,LOC106612697 coding downstream 93978 36794041 ~ 36797976 (+)
AMCG00013576 NA coding downstream 106695 36806758 ~ 36810451 (+)
AMCG00013575 NA coding downstream 143465 36843528 ~ 36860797 (+)
AMCG00013583 clip3,LOC106612689,LOC106580752 coding downstream 277209 36977272 ~ 37013396 (+)
G45373 NA non-coding upstream 84856 36613735 ~ 36613942 (+)
G45343 NA non-coding upstream 290063 36406043 ~ 36408735 (+)
G45301 NA non-coding upstream 510856 36160134 ~ 36187942 (+)
G45276 NA non-coding upstream 581467 36114055 ~ 36117331 (+)
G45230 NA non-coding upstream 714365 35974238 ~ 35984433 (+)
G45397 NA non-coding downstream 4589 36704652 ~ 36704893 (+)
G45403 NA non-coding downstream 19589 36719652 ~ 36719989 (+)
G45405 NA non-coding downstream 27887 36727950 ~ 36729956 (+)
G45408 NA non-coding downstream 82506 36782569 ~ 36783620 (+)
G45499 NA non-coding downstream 363894 37063957 ~ 37064264 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other upstream 52732 36620402 ~ 36646066 (+)
G45338 NA other upstream 294897 36403354 ~ 36403901 (+)
AMCG00013566 NA other upstream 328711 36338262 ~ 36370087 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other upstream 612955 36060755 ~ 36085843 (+)
G45209 LOC107575789 other upstream 1038965 35655302 ~ 35659833 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other downstream 36614 36736677 ~ 36738479 (+)
G45439 NA other downstream 174844 36874907 ~ 36877603 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other downstream 411705 37111768 ~ 37122611 (+)
AMCG00013595 NA other downstream 615150 37315213 ~ 37327711 (+)
AMCG00013616 ccdc9 other downstream 1105144 37805207 ~ 37817764 (+)

Expression


Co-expression Network