G45405


Basic Information

Item Value
gene id G45405
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36727950 ~ 36729956 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU56575
GTCgccgctgttgttgtttttgaaaaataatagttataataataataataaaaaaaaatatttaatatatattagcaCTAAAATGCCGACTTCACTGGTAATCCACACGTCAAAAAACACAACTTACTTTTACAGACACAATGCTacagtaacatttaaatattcattactCTTTAAGTCAAGTTAATGAATGGtgcccaaaataataataataataataaaacaaagaaacaaacaaaaaaaaacaaaaagcaataattCACCTTTCCAGTCAttccctttttgtatttttgttgttgttgtttattaatagtatataatatgttaaaataaatagctcATGAAAGaagcaaccaaaacaaatgaGGCCAGCAGCATAAAGAGTCTGTCTGTGGAACTTGGCACTAATTGGAAAAATGGAGCAACCCTTCTGTTTGAACTATTCTGACCTTTTCAGCATCTGAACTATATCTGCCTTGTCTTATAAGACATATTTGGCATTTCTAACTCCCTTGCTTTGTGTGCTTCTAGCATCCTGAAACATGacttaaaacacataaaaacacctgttctatgtttttttaaccttttttatttttattttttcagctgtgGTCCTTCTGGTAATAAAGTCAGCCATatatcaaaacattattttgaccATTATCGACAAAATGACTCATCTTTGTTCCGAGATTTTGTAGGAATTTTTATTGGAAATCCATGTATATCATATGTATCAGtaacatttaatgcatttctttcaagCGGAAGCGCATCAAACTAGACCTAGAACAGCAAAGGTGACGTTTTATCAAAGTCAAACTACTTTGCCCATGGGGAATCTCTATCCCCCTCAACAAATCCGTTCCCATAAACTGTGCAGTTATTTGAAGGTAGGCCCTTCTCCTTATAGTACTGTATGGCAGATATGTAGGGGTTTATGAGATATGTTCAAAGGTGGAAGCTTGAGGTTGAAATCACCTTCATTTTCAAACAAGAGATATTTTAATTCATGCCTTTGAAAAGAAACAGCTTGTTAACATTTCCTTCCCAGCTAAGCCTTCGCCAGTTACCTTTAGGACAAAACTGCTTGTGGTCGATGTCAGACTTTCCCTAATTCCACAACGTTCCTTTTTATGCTGCCAGCCTTGTTACGTTGAACACgaaatgggttttattttttacagttcaaCAAAAtcgaaaaaaacacaaaattctctatatttacagtgaggaaaaaaaatgaaggggtggcaaacagtttgtgtttttttgtttttgttttgcctgtctgtttgtttctctctctctgagaatCGTCCCAATGGCAAACGAGAATAGAAATCAAACTGAAAAGGAAACCGAAAAAACGTAATAATCCAATCAGATCAACTAAAATTGCACAGTCTCAAAGAAGTTTGGAGAATGGAATGGAGATATAAAATCCAAACAGGGTTGATGAACATAGAAGGGAGGAAAAAGGTCAATAGTTCATGGAGGGTGAAAGTTCAAAAGTTCAGAAGACAGTTGAAAAGATGTCTGCCCCAGCCGGCGTTATAAGCTcctcacacattttttttttatagtttaaaaaaaaaaattgtttgaaaatgagatattttttttccatcgAAATAAAATGGAGAGACTCTGAGTGAAGAGTGACAGGTGCCCCCAACACTATGGCACACAATCAATGATGTCCTGGAAGGTTGAAGAGATGAAAGAGAATTAGGAAAAGCAGTCTAAGAGAGGTAGCCAGCCTTTTTACTTTGTTAATCCAAgtctgcttttgcttttcttttttttttgataatgCTGAGGCGTCATGATTTAACATCATGTGATGAAGGAACATGCTGGCCTCATGAGTGCATCCGATGAATGTCCAACATACAAGAAAACTCAAAGAAGTCTGGAatggtattgtttttgtttggcacTCGGGAGAAACAGGAAGGATAGTGGCGGGTAGTGGGGAGCTGGGGGGGAAGTGGGGGCGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56575 True 2007 lncRNA 0.36 1 36727950 36729956

Neighbor

gene id symbol gene type direction distance location
AMCG00013570 NA coding upstream 14981 36709375 ~ 36712969 (+)
AMCG00013573 LOC107548551 coding upstream 34809 36692152 ~ 36693141 (+)
AMCG00013567 NA coding upstream 251558 36462852 ~ 36476392 (+)
AMCG00013568 NA coding upstream 283220 36434886 ~ 36444730 (+)
AMCG00013564 LOC106612713,LOC106580732,LOC105023074,LOC108435511 coding upstream 324932 36380969 ~ 36403018 (+)
AMCG00013574 irf2bp1,irf2bpl,LOC106580746,LOC108443036,LOC106612697 coding downstream 64085 36794041 ~ 36797976 (+)
AMCG00013576 NA coding downstream 76802 36806758 ~ 36810451 (+)
AMCG00013575 NA coding downstream 113572 36843528 ~ 36860797 (+)
AMCG00013583 clip3,LOC106612689,LOC106580752 coding downstream 247316 36977272 ~ 37013396 (+)
AMCG00013582 NA coding downstream 288495 37018451 ~ 37034474 (+)
G45403 NA non-coding upstream 7961 36719652 ~ 36719989 (+)
G45397 NA non-coding upstream 23057 36704652 ~ 36704893 (+)
G45395 NA non-coding upstream 27887 36698798 ~ 36700063 (+)
G45373 NA non-coding upstream 114008 36613735 ~ 36613942 (+)
G45343 NA non-coding upstream 319215 36406043 ~ 36408735 (+)
G45408 NA non-coding downstream 52613 36782569 ~ 36783620 (+)
G45499 NA non-coding downstream 334001 37063957 ~ 37064264 (+)
G45538 NA non-coding downstream 521245 37251201 ~ 37290765 (+)
G45737 NA non-coding downstream 1146427 37876383 ~ 37932198 (+)
G45805 NA non-coding downstream 1343299 38073255 ~ 38073852 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other upstream 81884 36620402 ~ 36646066 (+)
G45338 NA other upstream 324049 36403354 ~ 36403901 (+)
AMCG00013566 NA other upstream 357863 36338262 ~ 36370087 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other upstream 642107 36060755 ~ 36085843 (+)
G45209 LOC107575789 other upstream 1068117 35655302 ~ 35659833 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other downstream 6721 36736677 ~ 36738479 (+)
G45439 NA other downstream 144951 36874907 ~ 36877603 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other downstream 381812 37111768 ~ 37122611 (+)
AMCG00013595 NA other downstream 585257 37315213 ~ 37327711 (+)
AMCG00013616 ccdc9 other downstream 1075251 37805207 ~ 37817764 (+)

Expression


Co-expression Network