G45406 (nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550)


Basic Information

Item Value
gene id G45406
gene name nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36736677 ~ 36738479 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU56576
CCCTGTAGAGAAAATGCCACAAACTATGCTTTCTGGTACCAGTTCAGGATTCAGAGTCAAATTTCAGTCGTTTTCTAGCGCCACACTCAAAAGATAACCTCTGAGACAAGTCTAGCATTCTATGGTGTTTGTGACGTTGAAATTCGTGCATAAGCAGGCACCTATTTGAGTCAGCTTCCTGAACCAGATACTAAAGAAACTGTACTATGAGCCACCGGCAAAAGCCTTTGGCAAGAGCACGTCCCACCCCCCTCTTTATATGCCCGAGTAGGCCCggggaagaggaggggggaggggtgcATAGGTTGAATAtccttatttttcaaagcaaacaCTTGTTTGCGGCTTTGATGGACTTACAAGGGGGAAGGGGACGGGGAGGGGAGATTGGGACTGAAGGcgtaatattttcaaaagaataaaacaaagaaaaaaaaatacgaGCTACAGAGAAAGGGATAGGGGGAGTAAACCTGGGAGCAACCCCAGGAACTTTGACCCGGCAGCGTGCCGGTTTGAAATGCCGTTCGCAACCGtccaaagaacaaaaaaagaaaaaaaatccccaaaagaTCAGGATTTAAGTAAGAAAaccatatttacatattacacattttcttggtttctttgacaccttttttccttctgtgacgttttttttcccccacgtCATCCTTTTCTTAAATACTGAAACATGACCAGACGTTTGgatgatttgttttgaatttcttccttccttttttctgtAATCTTCCCCAGCCcccatttagatttttattttctccttttttccccccattttaaCCCACTTTCTGTGGGTTGGTAGCACGCACTCCTTGCTCATATGTGATCCTCTGGCTGATGAGATACTGAGCGGCTTGCGTGGCAGCTGGCGATCCAGTTATGGTAACTTTACGGTTCCGGGTGCCAGGGATAAATTCCCCTTTTTTCGATATCTGGATGCGGGCGCCCGTCAGCTCTTGGTATTCCACTAGCGTCTTCCCCCCTTTTCCTAGGATGGCTCCCACTAGATTTTCAGGGACAGCAATCTCCACCACATCTTTCGCTCCTTCTCCCAGCTTCTCAGTGGCCAGGAGAGAGCTGGCCACCAATGGGGACGTGGCGCTTAGGTATCCGTTGGTGGCCCCAGTGGCTGCCGCTAGCGATCCTAATGTGAAGCCGCCTAGTGTAGCTGCGGGGTGCCCGGCGCTGGTAGAGGCATCACTGGCGTAGGATGCCAGGAGGTTGGCTGCGGCAGCAGCTGCGGGGTTTGCACTGGCTGCCACTGCTGCCAGGACTCCAGAGGCGGCAGCTGGATTGAGACCCAGACCCAGGGAGTTGGTGTTGTATCCGTAACTGGCCAGCGTGTTGAGGGCTGAGGTGATGGCAAGAAGGTCGTTCCCTGAGAAACTTGACATGGTGGTGGGGAAGGCGCCGACTCCAGCCAGGCTGGCTTGGCCCAAGAGGCTGGAGGCTGTGGCAGCGGCGGCAGCGGCAGCGGGCAGGACCTCAGCTGAGTTGGCGTAGGGCGAGCCGGTGGGGTTGGAGTTGGCCACTGGGCCTGAGATGTTGGAGTAACTGATGTTCAGGCAGCTGCTACTCTGGGGATCCTCCTGGATTTTCTGCACGATGATCTCCACAGCCTTGCGGTTTTGCTCTGGCTCCCCACTGATGGTCACCACGCGCTCCTGCAGGTTGATGCCCTCTGGCTTCTGGGACAGCTGCACCCAGGCCCCCGACTGCTCCATGATGGCTTTGACTGTAGCGCCTCCCTTCCCGATGATCAGTCCTGCTGTGCTATTG

Function

symbol description
nova2 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome and regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in cytoplasm and nucleus. Is expressed in nervous system; neural plate; and posterior cardinal vein. Orthologous to human NOVA2 (NOVA alternative splicing regulator 2).

NR:

description
neuro-oncological ventral antigen 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56576 True 1803 TUCP 0.52 1 36736677 36738479

Neighbor

gene id symbol gene type direction distance location
AMCG00013570 NA coding upstream 23708 36709375 ~ 36712969 (+)
AMCG00013573 LOC107548551 coding upstream 43536 36692152 ~ 36693141 (+)
AMCG00013567 NA coding upstream 260285 36462852 ~ 36476392 (+)
AMCG00013568 NA coding upstream 291947 36434886 ~ 36444730 (+)
AMCG00013564 LOC106612713,LOC106580732,LOC105023074,LOC108435511 coding upstream 333659 36380969 ~ 36403018 (+)
AMCG00013574 irf2bp1,irf2bpl,LOC106580746,LOC108443036,LOC106612697 coding downstream 55562 36794041 ~ 36797976 (+)
AMCG00013576 NA coding downstream 68279 36806758 ~ 36810451 (+)
AMCG00013575 NA coding downstream 105049 36843528 ~ 36860797 (+)
AMCG00013583 clip3,LOC106612689,LOC106580752 coding downstream 238793 36977272 ~ 37013396 (+)
AMCG00013582 NA coding downstream 279972 37018451 ~ 37034474 (+)
G45405 NA non-coding upstream 6721 36727950 ~ 36729956 (+)
G45403 NA non-coding upstream 16688 36719652 ~ 36719989 (+)
G45397 NA non-coding upstream 31784 36704652 ~ 36704893 (+)
G45395 NA non-coding upstream 36614 36698798 ~ 36700063 (+)
G45373 NA non-coding upstream 122735 36613735 ~ 36613942 (+)
G45408 NA non-coding downstream 44090 36782569 ~ 36783620 (+)
G45499 NA non-coding downstream 325478 37063957 ~ 37064264 (+)
G45538 NA non-coding downstream 512722 37251201 ~ 37290765 (+)
G45737 NA non-coding downstream 1137904 37876383 ~ 37932198 (+)
G45805 NA non-coding downstream 1334776 38073255 ~ 38073852 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other upstream 90611 36620402 ~ 36646066 (+)
G45338 NA other upstream 332776 36403354 ~ 36403901 (+)
AMCG00013566 NA other upstream 366590 36338262 ~ 36370087 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other upstream 650834 36060755 ~ 36085843 (+)
G45209 LOC107575789 other upstream 1076844 35655302 ~ 35659833 (+)
G45439 NA other downstream 136428 36874907 ~ 36877603 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other downstream 373289 37111768 ~ 37122611 (+)
AMCG00013595 NA other downstream 576734 37315213 ~ 37327711 (+)
AMCG00013616 ccdc9 other downstream 1066728 37805207 ~ 37817764 (+)
AMCG00013618 NA other downstream 1079892 37818371 ~ 37821575 (+)

Expression


Co-expression Network