G45408


Basic Information

Item Value
gene id G45408
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36782569 ~ 36783620 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU56578
CTGGACAACATTgtaatactctctctctctcacacacacacacacacacacacacacacacacacactgtttgtCCTAGTCTTACCCCCAGTGTTGGTGCGCTTGGTGCTGCTCGCTTCTGTCGGGGTCTCCAGCGGTCTCTTGCGGGAATCGGGGGGGTCTGACTCCATGTGAGGTGGCTGGTTGTGGTGGTGAGAATTGGAAAAAATCCCGTTCTGTTGAACTGCCCCACCTGCCATCATTTTCATAGTAGCTTCACTCAAAAATAGTGTGATCGCCCAAATGAAAGCAGAATCAGTAGCGGGGAAGTGGGGGATGATATTGAAGAAAGGTTCTCAAGAGTTATCGATCTGGTCTTGTCTTCGTGAtctattttcctttctcttctttattttctgttatggCAAGCAAATGCAGACACGGacacacaataacaaacaaGGATGCGACGTGCCTTATTTGTTACAGTCTGGTGCGAAAAAGATGCTTTTGGTTgctgggagaaaaacaaaacgtcACATCTAGGCTACAAGAAATCCAGTGAATGAGCAGTTTCCTTTCACCTCCTGTAAACTAGAATGAGTGTACAGCTTCAACGCGTTTAATGATGTCTGTTTCCCCCCCCCTGTTTTGATTCATATAAGTGAAGCATTAGCTTTTGCCGTTTTGGCTTTACAATGACGCTCTTCTTTTGCAGGGAttccggagagagagagataagtcaaaaaagcaataatcaaaaatatatacttatgtGCGGCTGGTGAGCGGGTTCACAAAGACATGGAAAGTGTGACAGGAAGAAGAGGGAAATGAAACGAAGATTCGCTTGCCGTTATTCTTCGATTCTCGCATGAAAGCGTCTCCGTGGGTCGGTGCCAGCAAACAGGgatggttttgttgttgctttttttttttcgggcAGGTCTTGGAAGGGAAAGGATGCCGAGAatggtaacaaaacaaaacaaaaaaaatcctgtaaGAAAGAGATGCGATATCTGGGAGCTGCTGTACAAAAAGATGCTGCGGTCTGGCTTTCACAGCATCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56578 True 1052 lncRNA 0.45 1 36782569 36783620

Neighbor

gene id symbol gene type direction distance location
AMCG00013570 NA coding upstream 69600 36709375 ~ 36712969 (+)
AMCG00013573 LOC107548551 coding upstream 89428 36692152 ~ 36693141 (+)
AMCG00013567 NA coding upstream 306177 36462852 ~ 36476392 (+)
AMCG00013568 NA coding upstream 337839 36434886 ~ 36444730 (+)
AMCG00013564 LOC106612713,LOC106580732,LOC105023074,LOC108435511 coding upstream 379551 36380969 ~ 36403018 (+)
AMCG00013574 irf2bp1,irf2bpl,LOC106580746,LOC108443036,LOC106612697 coding downstream 10421 36794041 ~ 36797976 (+)
AMCG00013576 NA coding downstream 23138 36806758 ~ 36810451 (+)
AMCG00013575 NA coding downstream 59908 36843528 ~ 36860797 (+)
AMCG00013583 clip3,LOC106612689,LOC106580752 coding downstream 193652 36977272 ~ 37013396 (+)
AMCG00013582 NA coding downstream 234831 37018451 ~ 37034474 (+)
G45405 NA non-coding upstream 52613 36727950 ~ 36729956 (+)
G45403 NA non-coding upstream 62580 36719652 ~ 36719989 (+)
G45397 NA non-coding upstream 77676 36704652 ~ 36704893 (+)
G45395 NA non-coding upstream 82506 36698798 ~ 36700063 (+)
G45373 NA non-coding upstream 168627 36613735 ~ 36613942 (+)
G45499 NA non-coding downstream 280337 37063957 ~ 37064264 (+)
G45538 NA non-coding downstream 467581 37251201 ~ 37290765 (+)
G45737 NA non-coding downstream 1092763 37876383 ~ 37932198 (+)
G45805 NA non-coding downstream 1289635 38073255 ~ 38073852 (+)
G45812 NA non-coding downstream 1314370 38097990 ~ 38098531 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other upstream 44090 36736677 ~ 36738479 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other upstream 136503 36620402 ~ 36646066 (+)
G45338 NA other upstream 378668 36403354 ~ 36403901 (+)
AMCG00013566 NA other upstream 412482 36338262 ~ 36370087 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other upstream 696726 36060755 ~ 36085843 (+)
G45439 NA other downstream 91287 36874907 ~ 36877603 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other downstream 328148 37111768 ~ 37122611 (+)
AMCG00013595 NA other downstream 531593 37315213 ~ 37327711 (+)
AMCG00013616 ccdc9 other downstream 1021587 37805207 ~ 37817764 (+)
AMCG00013618 NA other downstream 1034751 37818371 ~ 37821575 (+)

Expression


Co-expression Network