G45538


Basic Information

Item Value
gene id G45538
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37251201 ~ 37290765 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU56746
CACAAAGTGAACAAGTCtagattttagatttaatttatttacattagattatttcagtatttacaATTCATGACAAGAATATTCATACATCTAATTGTACATCAGCTTACAGTAAGTCACCACAAACCGACAAAAGACTGTTCCCAAATAAGGCATTTTTAAGgcaattgtgttttctttgtcaaTGCAGTTTTAACAGGAAGATTATTGCATTGCCTTGTTTTGTACCTCAAGTAGCCAGTTGGTGAGACcaagatattgtgcaagtacaTTTAAAGAGTTTGGGGTAGGAATGGCAGGAACATTGAACAAAAAACAGTCTAAGAATATCAGAAAcagttttttcttaatttgtgatcattgtaacaattttatttctcttggctatttttatattgctgttaattattaaaatattatgtgGTTTCCCCTTTGTATGGTGGATCGTTGGATGACACTACTTGATGAAACGTTTAAAAATCCCGATATAAAACTGCATACTTGATATTGTGATTTGTTTCAGAATATAGGCTACAGCTGTTAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56746 True 546 lncRNA 0.31 2 37251201 37290765

Neighbor

gene id symbol gene type direction distance location
AMCG00013593 NA coding upstream 22554 37226656 ~ 37228647 (+)
AMCG00013588 ckma,LOC101077669,LOC103045415,LOC103141037 coding upstream 80554 37154267 ~ 37170647 (+)
AMCG00013586 NA coding upstream 118012 37129018 ~ 37133189 (+)
AMCG00013589 capns1,LOC102233422,LOC105011036,LOC105909712 coding upstream 145221 37101686 ~ 37105980 (+)
AMCG00013584 NA coding upstream 176886 37071514 ~ 37074315 (+)
AMCG00013598 NA coding downstream 62517 37353282 ~ 37393858 (+)
AMCG00013600 NA coding downstream 115526 37406291 ~ 37411449 (+)
AMCG00013601 supt5h,LOC107662786,LOC107597543,LOC107657557,LOC107586261 coding downstream 120901 37411666 ~ 37486810 (+)
AMCG00013599 supt5h,LOC106580766 coding downstream 196423 37487188 ~ 37518978 (+)
AMCG00013602 timm50 coding downstream 283585 37574350 ~ 37581432 (+)
G45499 NA non-coding upstream 186937 37063957 ~ 37064264 (+)
G45408 NA non-coding upstream 467581 36782569 ~ 36783620 (+)
G45405 NA non-coding upstream 521245 36727950 ~ 36729956 (+)
G45403 NA non-coding upstream 531212 36719652 ~ 36719989 (+)
G45397 NA non-coding upstream 546308 36704652 ~ 36704893 (+)
G45737 NA non-coding downstream 585618 37876383 ~ 37932198 (+)
G45805 NA non-coding downstream 782490 38073255 ~ 38073852 (+)
G45812 NA non-coding downstream 807225 38097990 ~ 38098531 (+)
G45854 NA non-coding downstream 920325 38211090 ~ 38212886 (+)
G45860 NA non-coding downstream 947774 38238539 ~ 38243152 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other upstream 128590 37111768 ~ 37122611 (+)
G45439 NA other upstream 373598 36874907 ~ 36877603 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other upstream 512722 36736677 ~ 36738479 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other upstream 605135 36620402 ~ 36646066 (+)
G45338 NA other upstream 847300 36403354 ~ 36403901 (+)
AMCG00013595 NA other downstream 24448 37315213 ~ 37327711 (+)
AMCG00013616 ccdc9 other downstream 514442 37805207 ~ 37817764 (+)
AMCG00013618 NA other downstream 527606 37818371 ~ 37821575 (+)
AMCG00013629 hnrnpl2,LOC105006371 other downstream 764132 38054897 ~ 38069645 (+)
G45850 NA other downstream 939801 38230566 ~ 38231330 (+)

Expression


Co-expression Network