G45571


Basic Information

Item Value
gene id G45571
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37130858 ~ 37223824 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU56784
accACTTTCGGCTTTATTAAGGAAATCAATTTAATTCCAACCTGAAAttacagctaaaaaaaaaaaaaaaagttgaaattcTCCATGAATAATCAAAGTTGTTCTGACAATAAACAGTTTTGTGGTTCCTTGgaaaattcatttaaaaaaaaagtcagctgCCCTTATTACACTAGACTGTGCGAGGTAACCGAGCAAGTAGTAGTACGCTGAGATTTTAGTTCATTAATGTAACggactaaatacaaataaatacataaataaatctaattatataaaatcaaagAGGTAACCGAACTGATTTCCAATTCCTCAaaatttgtgaatgttgttaATGCTATAGAAGCATATTAGTGATACATTTAAGGCAAGgtccaaaaagaaaagaaaataggtGGGATATTACATGCGGCGTAATGTAACATTCCCTGTTTCTAGTCTATGGCAGGAATACTTCGGCCCTCCGCTGCTGTGGTCCGAAAGTTTTTATTCttggtagaaaaataaaatgttatcacCGCAAAGGTGCTCTGAGATCATAGCTTTggacaataatatatatacaataatagtaacaatagtaataacaaGCACcctttttgaaaacattaaagcaGATGTTTCAAGCCACACTTCTTGGATGGGCACTGTTCTGTAAAGAGGTGGGAACAAGTTTAAATTAATCACGTTAGGCAATTACTAAAACAACTGTTGTGAAAATCAATTCACCCTGTGAATCCTTCAGGATTGCATTAATTCGGGGttataataacaacatacaGCACCTCTATGAGTGTCCCAGTGAGTTAAATCCTATCACAGTTCCTGTCCACACAGCCTCCTCTGATTATAAATGGCTGTTTTGGGTTAAAGCTAGGGACTTGTTGTCTAAAATAAGGTCAGTACGGaccacaaaataaactatttgtgttattatttaaattatactgttATTTGTCAAGCGTCAAGGTACATACATTTATGGACGTGGTTTGCATTAATTGAAACTCTTAAAAGTAACGTGTTGCAAttctatacaaaatatattgtcatCACACCAGAAGCATTTTGTGTAGCTTTCTGCACAACTATAGTGagccatattcataaaacgGTTACTGTAGCACTAGGTTAACACCCGTTTTTCCTaagcaagaaaaacacaaacacaaaaaagtggAGAAGTGTCACCTACTGCTTTTATAAACTAATTAATTCCACAAAAGCTTGCAAGGTCAGACAGATATTGGATTCACCAGAATAAAGGTCTCTAATTGGTGGTACTCCAGTATTAGGTTTGGACATTTTgagtagtttttgttttccaccaCACACTTAACAATGGTCACACTCAACACCCTTATGAATACAGGCCCAagttgtacaaaaaaaatactgtttggaATTCTTCCAAGAGCACCGGGATTTGTAGGTAACAGCTGGATTTGTGTACAGGCAGCAGTCAGACAATGGTTTAGGTGGACAAGAAGTGGAGATCGTTCAGGAAGAActcttttggtttgtttttgtttttcattgttgtatttctttttcattcactGTAAAAAGAGGAAATTAACTGCCCTCCTCATGGGCTCATATCATGTTCCTGATATGCTTAATAAAACTAAGCTCCGGCTTGGCTAAAATCCAATCGCATACGAGGTGGGGGGAGAGTCCATTAAAACTCCTTGTCCATAACTAAGGCTCCCCGGTTAGAACTCAGACGTAGCGGAGAGAAGCTGGGAAGAGAAGTGTGGCAACTTCGACTTACAGCCGCAACCACAAATCCTCTGTCCTCTCTGCAACCTCTGTCATGCAGTCCACTTGTGGCCTTCCGGTGCTCGCGGTCACAGCGTGCCCAGGACAGACCACAGTTCTAGGTTGGCGCAGGGGGGTGGCCGTTCAGTTTGTCGTGCATGAGAGCCAGGGCCCCAGCGGTGAACTCGCGCAGCACCTGGACTGTTTCCCTCTGCATCTGCAACGAGTCCCGCACAAAGTCTTGCTGGGTCTCCACCATCTGCTGCATGGACTCGGACAGCAGCTCTAGCGAGCGTGACACCGTCTCCAGCAGCTCGTTGGTGGTGCGCTGCTCGCGGATGCTCAGCGTGGCATTGTGCACCATCTTCTCTCGCACGCTCAAGGAATTCCGAGAGGCCATCAGGGGGCTGGTGGGGGCCGTTGAGCCCCCTCCGCCCCTACGAAGCCCCCCACCCAGGAGGGAGTCCTCCTCAACCTGGGACAGAGGGGCGGCAGGCTGGAGACGGGCCGTGGTGGCAGCTGAGAGGAAATGGGCTCGGCGTTCCTCTTCCGACTCCAACGACTCCA
>TU56785
aataatagtataataacaaGCACcctttttgaaaacattaaagcaGATGTTTCAAGCCACACTTCTTGGATGGGCACTGTTCTGTAAAGAGGTGGGAACAAGTTTAAATTAATCACGTTAGGCAATTACTAAAACAACTGTTGTGAAAATCAATTCACCCTGTGAATCCTTCAGGATTGCATTAATTCGGGGttataataacaacatacaGCACCTCTATGAGTGTCCCAGTGAGTTAAATCCTATCACAGTTCCTGTCCACACAGCCTCCTCTGATTATAAATGGCTGTTTTGGGTTAAAGCTAGGGACTTGTTGTCTAAAATAAGGTCAGTACGGaccacaaaataaactatttgtgttattatttaaattatactgttATTTGTCAAGCGTCAAGGTACATACATTTATGGACGTGGTTTGCATTAATTGAAACTCTTAAAAGTAACGTGTTGCAAttctatacaaaatatattgtcatCACACCAGAAGCATTTTGTGTAGCTTTCTGCACAACTATAGTGagccatattcataaaacgGTTACTGTAGCACTAGGTTAACACCCGTTTTTCCTaagcaagaaaaacacaaacacaaaaaagtggAGAAGTGTCACCTACTGCTTTTATAAACTAATTAATTCCACAAAAGCTTGCAAGGTCAGACAGATATTGGATTCACCAGAATAAAGGTCTCTAATTGGTGGTACTCCAGTATTAGGTTTGGACATTTTgagtagtttttgttttccaccaCACACTTAACAATGGTCACACTCAACACCCTTATGAATACAGGCCCAagttgtacaaaaaaaatactgtttggaATTCTTCCAAGAGCACCGGGATTTGTAGGTAACAGCTGGATTTGTGTACAGGCAGCAGTCAGACAATGGTTTAGGTGGACAAGAAGTGGAGATCGTTCAGGAAGAActcttttggtttgtttttgtttttcattgttgtatttctttttcattcactGTAAAAAGAGGAAATTAACTGCCCTCCTCATGGGCTCATATCATGTTCCTGATATGCTTAATAAAACTAAGCTCCGGCTTGGCTAAAATCCAATCGCATACGAGGTGGGGGGAGAGTCCATTAAAACTCCTTGTCCATAACTAAGGCTCCCCGGTTAGAACTCAGACGTAGCGGAGAGAAGCTGGGAAGAGAAGTGTGGCAACTTCGACTTACAGCCGCAACCACAAATCCTCTGTCCTCTCTGCAACCTCTGTCATGCAGTCCACTTGTGGCCTTCCGGTGCTCGCGGTCACAGCGTGCCCAGGACAGACCACAGTTCTAGGTTGGCGCAGGGGGGTGGCCGTTCAGTTTGTCGTGCATGAGAGCCAGGGCCCCAGCGGTGAACTCGCGCAGCACCTGGACTGTTTCCCTCTGCATCTGCAACGAGTCCCGCACAAAGTCTTGCTGGGTCTCCACCATCTGCTGCATGGACTCGGACAGCAGCTCTAGCGAGCGTGACACCGTCTCCAGCAGCTCGTTGGTGGTGCGCTGCTCGCGGATGCTCAGCGTGGCATTGTGCACCATCTTCTCTCGCACGCTCAAGGAATTCCGAGAGGCCATCAGGGGGCTGGTGGGGGCCGTTGAGCCCCCTCCGCCCCTACGAAGCCCCCCACCCAGGAGGGAGTCCTCCTCAACCTGGGACAGAGGGGCGGCAGGCTGGAGACGGGCCGTGGTGGCAGCTGAGAGGAAATGGGCTCGGCGTTCCTCTTCCGACTCCAACGACTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56784 True 2328 TUCP 0.43 2 37130858 37133244
TU56785 False 1757 TUCP 0.46 3 37130858 37223824

Neighbor

gene id symbol gene type direction distance location
AMCG00013591 LOC106612685,LOC101475786,LOC103372140 coding downstream 35405 37079241 ~ 37095453 (-)
AMCG00013585 NA coding downstream 115516 37014208 ~ 37015342 (-)
AMCG00013580 NA coding downstream 167637 36957633 ~ 36963221 (-)
AMCG00013579 NA coding downstream 175048 36942654 ~ 36955810 (-)
AMCG00013577 NA coding downstream 215047 36902425 ~ 36915811 (-)
AMCG00013597 NA coding upstream 27392 37251216 ~ 37277751 (-)
AMCG00013596 NA coding upstream 69115 37292939 ~ 37312946 (-)
AMCG00013607 LOC107683438,LOC107592930,LOC107672095,LOC106580762,LOC107757416 coding upstream 460785 37684609 ~ 37687237 (-)
AMCG00013611 NA coding upstream 492635 37716459 ~ 37735391 (-)
AMCG00013610 zc3h4,LOC106580865,LOC106612521 coding upstream 528899 37752723 ~ 37758389 (-)
G45513 NA non-coding downstream 24235 37101887 ~ 37106623 (-)
G45509 NA non-coding downstream 43998 37086586 ~ 37086860 (-)
G45437 NA non-coding downstream 260173 36867304 ~ 36870685 (-)
G45410 NA non-coding downstream 394330 36732988 ~ 36736528 (-)
G45409 NA non-coding downstream 400908 36727916 ~ 36729950 (-)
G45583 NA non-coding upstream 101535 37325359 ~ 37327756 (-)
G45599 NA non-coding upstream 166834 37390658 ~ 37393857 (-)
G45611 NA non-coding upstream 235713 37459537 ~ 37461946 (-)
G45616 NA non-coding upstream 292335 37516159 ~ 37519003 (-)
G45654 NA non-coding upstream 457583 37681407 ~ 37681619 (-)
G45468 NA other downstream 170944 36959177 ~ 36959914 (-)
AMCG00013578 NA other downstream 245365 36879193 ~ 36885493 (-)
AMCG00013531 NA other downstream 3431146 33692844 ~ 33699712 (-)
G45037 NA other downstream 3451951 33678224 ~ 33678907 (-)
AMCG00013518 NA other downstream 3629111 33468849 ~ 33501747 (-)
G45614 supt5h other upstream 259092 37482916 ~ 37483608 (-)
G45617 LOC100846954 other upstream 264905 37488729 ~ 37538310 (-)
AMCG00013608 NA other upstream 440131 37663955 ~ 37670395 (-)
G45764 NA other upstream 786274 38010098 ~ 38012216 (-)
G45790 NA other upstream 811486 38035310 ~ 38035667 (-)

Expression


Co-expression Network