G45614 (supt5h)


Basic Information

Item Value
gene id G45614
gene name supt5h
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37482916 ~ 37483608 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU56844
CAGGTGCTGAATATGCATGGCAAGGTACTGACAGTCCGACACCAGGCTGTAAACAGGAGGAAGGACAACAGGTTTGCTGTGGCTCTGGATTCGGAGCAGAACAACATCCACGTCAAAGACATCGTCAAGGTCATCGATGGCCCACACTCAGGACGAGAAGGAGAGATCAGACATTTGTTCCGTGGGTTTGCTTTCCTGCACTGCAAGAAGCTGGTGGAGAACGGAGGCATGTTTGTGTGCAAGACCCGACATTTGGTCCTGGCTGGGGGCTCCAAGGTGACTTTCCCCACTGTAGACATGGCAATTTTTGAACTATACAGCGATAATGCCTGTCGACTTTCATAACTAACCCGTTGTTATTCTTGCATTTAATGAAGATTCagatgttaaagaaaaaaggggTACATTTGGCAttgcaaatgtgtgtgtctaGGGTTGTGGATTAGGCTCTTGTTAGAGCTTAAAATGTGGCCGGTAA

Function

symbol description
supt5h Enables DNA binding activity. Acts upstream of or within several processes, including generation of neurons; regulation of signal transduction; and regulation of transcription elongation from RNA polymerase II promoter. Located in nucleus. Is expressed in brain and optic cup. Orthologous to human SUPT5H (SPT5 homolog, DSIF elongation factor subunit).

NR:

description
PREDICTED: transcription elongation factor SPT5 isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56844 True 478 TUCP 0.47 2 37482916 37483608

Neighbor

gene id symbol gene type direction distance location
AMCG00013596 NA coding downstream 169970 37292939 ~ 37312946 (-)
AMCG00013597 NA coding downstream 205165 37251216 ~ 37277751 (-)
AMCG00013594 LOC107601731,LOC107690446,LOC107743699 coding downstream 269318 37200451 ~ 37213598 (-)
AMCG00013592 NA coding downstream 291281 37175701 ~ 37191635 (-)
AMCG00013590 klc3,LOC108425834,LOC106580868 coding downstream 331055 37139369 ~ 37151861 (-)
AMCG00013607 LOC107683438,LOC107592930,LOC107672095,LOC106580762,LOC107757416 coding upstream 201001 37684609 ~ 37687237 (-)
AMCG00013611 NA coding upstream 232851 37716459 ~ 37735391 (-)
AMCG00013610 zc3h4,LOC106580865,LOC106612521 coding upstream 269115 37752723 ~ 37758389 (-)
AMCG00013617 NA coding upstream 297985 37781593 ~ 37791151 (-)
AMCG00013621 NA coding upstream 392707 37876315 ~ 37891990 (-)
G45611 NA non-coding downstream 20970 37459537 ~ 37461946 (-)
G45599 NA non-coding downstream 89059 37390658 ~ 37393857 (-)
G45583 NA non-coding downstream 155160 37325359 ~ 37327756 (-)
G45513 NA non-coding downstream 376293 37101887 ~ 37106623 (-)
G45509 NA non-coding downstream 396056 37086586 ~ 37086860 (-)
G45616 NA non-coding upstream 32551 37516159 ~ 37519003 (-)
G45654 NA non-coding upstream 197799 37681407 ~ 37681619 (-)
G45655 NA non-coding upstream 198369 37681977 ~ 37682213 (-)
G45658 NA non-coding upstream 206925 37690533 ~ 37691169 (-)
G45716 NA non-coding upstream 327096 37810704 ~ 37821611 (-)
G45571 NA other downstream 259092 37130858 ~ 37223824 (-)
G45468 NA other downstream 523002 36959177 ~ 36959914 (-)
AMCG00013578 NA other downstream 597423 36879193 ~ 36885493 (-)
AMCG00013531 NA other downstream 3783204 33692844 ~ 33699712 (-)
G45037 NA other downstream 3804009 33678224 ~ 33678907 (-)
G45617 LOC100846954 other upstream 5121 37488729 ~ 37538310 (-)
AMCG00013608 NA other upstream 180347 37663955 ~ 37670395 (-)
G45764 NA other upstream 526490 38010098 ~ 38012216 (-)
G45790 NA other upstream 551702 38035310 ~ 38035667 (-)
G45792 slc8a2,LOC103358178,LOC107739881 other upstream 560128 38043736 ~ 38043968 (-)

Expression


Co-expression Network