G45854


Basic Information

Item Value
gene id G45854
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38211090 ~ 38212886 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU57153
CGCCCAgcaaataatcaatcaataaacccATAAACCACTTAATAAAATAGgctaattaatgaaaataaacacaatgaaaccaccacacagcaaataaataataaaataataaagcaaacaagTGATAAGTGAAATAAGTGCAACAGCAATACAACAAAGGAAGAAAGGATAGTAAATTAATTAGTGAATAATCAACCAATTATTAAGTGATTAAGGCCATAACACACTGCTCGTGAcatattcaaatcactcagcCAAGGCATTTTTAGGAATAATAAGTaccaattttattcacaaattgtagatgaaacatttaaaataataagcgACAAACATCTGATCTTGCGTCTCAGTGACTGAATTCCCGAACTGAGCAGGGTCCTCTGTACACGTCTGGGTTCAATTcTCGTTGATGTTGAGAGTCTCCAGTGTGACGTCTCCAATTACCCTGATTGCACTCACTCTCTCCAGAGGCATCCTCTGCTGGAAAGTGTGGATCTGATTGCCATTCACAttgatcTCGAAGGCCTCAGCGCTGGCGGTGATGATGAGTTGGAAGCTCTCCCCCTTTGTGAAGGGTACTTCTGGAACCACATCCTCTTCCTCCCAGTATCCGTCCCTCAAGGTGTTGAACACTATATCATTGTCATCAAAGCGTGGGTTGACGTGCAGGGCGATGTCACTGTCCTCGGAATCGCCGCACTGCAGGTTCACTGCAAACCTGGTGCAATTATTATCGATCACCCCACTGATGCTGACAGACATCCCCGGACTCAAGGACAATGGGCCCAGATACGGCACAgtctgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57153 True 808 lncRNA 0.43 4 38211090 38212886

Neighbor

gene id symbol gene type direction distance location
AMCG00013638 NA coding upstream 16760 38188374 ~ 38194330 (+)
AMCG00013631 NA coding upstream 89286 38118324 ~ 38121804 (+)
AMCG00013630 LOC101464407 coding upstream 123279 38077005 ~ 38087811 (+)
AMCG00013625 NA coding upstream 157529 38051221 ~ 38053561 (+)
AMCG00013626 slc8a2,LOC105026810,LOC106612604,LOC106580848,LOC103476200 coding upstream 166540 38032609 ~ 38044550 (+)
AMCG00013640 NA coding downstream 132931 38345817 ~ 38353162 (+)
AMCG00013646 NA coding downstream 169583 38382469 ~ 38398767 (+)
AMCG00013647 napa,LOC108413256,LOC103368726 coding downstream 238903 38451789 ~ 38458783 (+)
AMCG00013648 NA coding downstream 254646 38467532 ~ 38468896 (+)
AMCG00013649 NA coding downstream 264081 38476967 ~ 38478698 (+)
G45812 NA non-coding upstream 112559 38097990 ~ 38098531 (+)
G45805 NA non-coding upstream 137238 38073255 ~ 38073852 (+)
G45737 NA non-coding upstream 278892 37876383 ~ 37932198 (+)
G45538 NA non-coding upstream 920325 37251201 ~ 37290765 (+)
G45499 NA non-coding upstream 1146826 37063957 ~ 37064264 (+)
G45860 NA non-coding downstream 25653 38238539 ~ 38243152 (+)
G45862 NA non-coding downstream 33070 38245956 ~ 38246418 (+)
G45863 NA non-coding downstream 37141 38250027 ~ 38252663 (+)
G45865 NA non-coding downstream 141028 38353914 ~ 38354711 (+)
G45941 NA non-coding downstream 204679 38417565 ~ 38474315 (+)
AMCG00013629 hnrnpl2,LOC105006371 other upstream 141445 38054897 ~ 38069645 (+)
AMCG00013618 NA other upstream 389515 37818371 ~ 37821575 (+)
AMCG00013616 ccdc9 other upstream 393326 37805207 ~ 37817764 (+)
AMCG00013595 NA other upstream 883379 37315213 ~ 37327711 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other upstream 1088479 37111768 ~ 37122611 (+)
G45850 NA other downstream 17680 38230566 ~ 38231330 (+)
G45894 NA other downstream 157770 38370656 ~ 38373198 (+)
AMCG00013654 NA other downstream 351603 38564489 ~ 38566281 (+)
AMCG00013665 NA other downstream 432392 38645278 ~ 38673471 (+)
AMCG00013672 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC107572204 other downstream 443710 38656596 ~ 38707354 (+)

Expression


Co-expression Network