G45860



Basic Information


Item Value
gene id G45860
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38238539 ~ 38243152 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU57159
AGTCTCTTCTCTATAAGACTGACTCTCCTGCACTACAGAGCCTCCGTCAGTCCATCTGTCCAGCGCCGACTCCATCTCTTTGTCCATCTGTCAGTGTGTCCGTGTGACTGTCTGTACCTCTCTGAGTGACCATGGCTTACTGCGCTCCTCCAGGTTACCAACCCCAATGCAACCCGGGAGGAGGAATGGGATACCAGGGCGGAAATCTAccgATGATGGGTGGAGCTCCAATCTATAATCCAGTGAgtactgtgtgtgcagtgttgtttGTAGTACTGGttgtcgtgtgtgtgtttgtagtgtttgACTATGCTGCATGTAGGTTTtgtaaagaacataagaaagtttacccatctggcccaggtgatttgattgtttttaattctgctagtccctttagtacctcctcctcatttatcctgatctcttagtttgactggactgatttgttaacctgtggcatgttatcagttttttcttttttttttcttttgtaaaaacctctgtgaaatactaatttagaacattttgccacatcttgtttgttttccaatattCATTTttgctgtttcacttcctcctttattgacctcttgctgttttagtattggggggggggggggaaaccactttgcattagttttaggtCCCAGggctatgtttctttccatttccctctttgctttcctgatctttttgcagttctatatattctttgtattttgttttgcctctatcccttttgtatgagctatacaacatttttattttcttaatttttttgcatacttctattaaaccagtttggccaatgttttttggtcctcaatttgctcagttttggtacagatttctcctgagcctcaagtagtatattcttaaaattataaccatccattttcgactgaatctgtatccagtgtgctccagtctaatgCTTTGTTTTT

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU57159 True 947 lncRNA 0.40 3 38238539 38243152

Neighbor


gene id symbol gene type direction distance location
AMCG00013638 NA coding upstream 44209 38188374 ~ 38194330 (+)
AMCG00013631 NA coding upstream 116735 38118324 ~ 38121804 (+)
AMCG00013630 LOC101464407 coding upstream 150728 38077005 ~ 38087811 (+)
AMCG00013625 NA coding upstream 184978 38051221 ~ 38053561 (+)
AMCG00013626 slc8a2,LOC105026810,LOC106612604,LOC106580848,LOC103476200 coding upstream 193989 38032609 ~ 38044550 (+)
AMCG00013640 NA coding downstream 102665 38345817 ~ 38353162 (+)
AMCG00013646 NA coding downstream 139317 38382469 ~ 38398767 (+)
AMCG00013647 napa,LOC108413256,LOC103368726 coding downstream 208637 38451789 ~ 38458783 (+)
AMCG00013648 NA coding downstream 224380 38467532 ~ 38468896 (+)
AMCG00013649 NA coding downstream 233815 38476967 ~ 38478698 (+)
G45854 NA non-coding upstream 25653 38211090 ~ 38212886 (+)
G45812 NA non-coding upstream 140008 38097990 ~ 38098531 (+)
G45805 NA non-coding upstream 164687 38073255 ~ 38073852 (+)
G45737 NA non-coding upstream 306341 37876383 ~ 37932198 (+)
G45538 NA non-coding upstream 947774 37251201 ~ 37290765 (+)
G45862 NA non-coding downstream 2804 38245956 ~ 38246418 (+)
G45863 NA non-coding downstream 6875 38250027 ~ 38252663 (+)
G45865 NA non-coding downstream 110762 38353914 ~ 38354711 (+)
G45941 NA non-coding downstream 174413 38417565 ~ 38474315 (+)
G45951 bckdha,LOC102788451 non-coding downstream 226902 38470054 ~ 38472706 (+)
G45850 NA other upstream 7209 38230566 ~ 38231330 (+)
AMCG00013629 hnrnpl2,LOC105006371 other upstream 168894 38054897 ~ 38069645 (+)
AMCG00013618 NA other upstream 416964 37818371 ~ 37821575 (+)
AMCG00013616 ccdc9 other upstream 420775 37805207 ~ 37817764 (+)
AMCG00013595 NA other upstream 910828 37315213 ~ 37327711 (+)
G45894 NA other downstream 127504 38370656 ~ 38373198 (+)
AMCG00013654 NA other downstream 321337 38564489 ~ 38566281 (+)
AMCG00013665 NA other downstream 402126 38645278 ~ 38673471 (+)
AMCG00013672 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC107572204 other downstream 413444 38656596 ~ 38707354 (+)
AMCG00013681 NA other downstream 568793 38811945 ~ 38821954 (+)

Expression



Co-expression Network