G45863


Basic Information

Item Value
gene id G45863
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38250027 ~ 38252663 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU57163
tattattatttttttatcagttcaatctgcaattaaatacagGCTGCTGTCTGATAGCGTgcatacccacacacacacacacgcagtcacgcacacactcacactgtgcAAAACTAATATCATCACGATAGGGTGACACCACAGAATTTTGGGTGTCACTCAAATTCTGGACACATAATGGGGAGGTCAAAGGACAAATGTAGAAGGTAACAGGGTCACCTATCGTATTTCACATTCtcactgcatttaaatatttctaaaactCAGGTTAGGAACAGAAACAGAATCACTGCGCTTGCCCCTTCAACGGGCATGGTAAGGTGCTGTGTTGCAGAGATTTTATTTCAGCTCCCAGAAAACAGAGAGGCTGAAATTAGGCAACAAGGCAATGTACACCGAAAGAATTGCAAAGAGTCAGTAAAGGGATGCCTTATCGATGTCatcacagaaatacaaatacaacctcaaataataataataaaactgtttgtttatttatttattcattcatttattaatcgATTTCATTTCTGGGATTCAGGTGAACAGAGAGACTGGCAGTTTATGCAATTTTCAGACagaacaacattaaaacataagaaagtttacaaacgagaggatgccattcgacccatcatggtttattcttcttgttattattattatgattattgttactGCTAGtgggtttatattttaaacagcattCTTTACATCTTAGCTTTTACAAGGAAGCAAGACTAAAAGCGTTTACATTGAAACAGGAGACTTTACACTGAGAGTGGTGGGGGGCTGgaactgactgactgcctgatACACTGACTTTTAGattgacagactgatacaccaTCCCTATAGCTATTCCTGATACATCCTATTTTCATTGTGCTGTACAACActgtaaatgtactgtaatactgtactgtaccacattGTACCTGTACTGTtatacactatactgtactacactgtaactgtaaatgtactgtactgttccACACTGTAACTGTACTGTGCTATTCTGAAcagtactgtactatactgtaatGTACTAAACTGgactgtgctgctctgtgggaGACAGACTGTCTGAACAGAAGCAggtgcagtgtctgtgtctctatacgtgtgtacctgtgtgtgtatctgtccaGCACAACTGATCACCTACACACAGTAGCAAACTGACCAGACTGGCTCAACACTGCCCTCTAGTGTGGATGTGCAACAGTGCAAGGCACTCCACACTACCTCACTTTCCACTCGAACCCCAAGAGACCGTAACTGTCCGCACTGTGAAATCTGTCAATcaattttattataaagtgCCTTTCTTGACACACTTATCTCAAAGCTCTGTacaacacagataaacacacacacacacacacacacacacacacatacacagacacacatcccAGCATGACCCGTACTGGCAGGAATAATGACTGACAAATTCAACAAATCTTGGTTATTTACTTCAGTTCTCTcgttctctatctctctctctttcattctcaTTATAACTTTCAAAGACACTCTTCTGTCTATTAGAGGTTTTACATAAAGAACAgaaggacaaaaacaaataaataaatgcattataatcacaataataacaataagaataaaaacaacaaaaacaagaagcaCATACCCTGCGGTGCACACAAGCTCATAGTCTGGGGaggatttttaatatatatttttgcaaacaattaaatattttttaaaagaaaagaaatacattttaataaataaagggaaatggaagaagaaagagaaaagataacatctactgctactactgtttctaataataataataataataataataataataatagtgaagtAGACTGTCCACCACTGGCATCTGTTGTGTACAGGGTTTCAGTGGCAGCTGTATTCAATGTAGTAGGCACTGTGTTCTCTGTCACCTCCTCTGTAGACAGACAGCTAGACTAGCATGTAACGAACATGTAACTAGCGtgtgagagactgtgtgtgtgtgtaatgtgtgtgaaCAGCTCTAAGTTAAAGTGTGTCTGATACACGCGCAGGTATTTACAGAATTACAAAGCCCTCTCTCTCTAGCTCACGTTCTCTGTCTTGTGACAGTAGCTGGGGGCTGTacgtctgtatgtgtgtgcagtgcGTGTATCTGCctgtcttgtctgtctgtctgtctgcagggaTGTGAGACAATCGGTAGGTGGCAGTGGCCAAGGGGGTGTTGGTGTCAGCTGTGGGATCACTCCGTCAGAATGCAGTCTTGATGATTTAATTGCTAGCAAACAGAGATACAATTAATCTCCCCCACTGAATGAACCATCTTCATTACTGTAGACAAACACCACCCCCACACTGCCTCACTGCTCtccttctcacacacacacactcagtcactcacacacttactcacacacacacacccattcactcattcaaacacacacccaGACTAGCAGGTTTATCCCAGCAGATCCTCATATTGCTTTCTGAAACAATCTCCAGCAGGGAAGAAATCCCAGCATCTCTCCTGATACATCTTCCACACATAGGACTCCTAGAGAAAGAGGAGGGGCAAGGGAAGACgttgggagggag

Function

GO:

id name namespace
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57163 True 2613 lncRNA 0.40 2 38250027 38252663

Neighbor

gene id symbol gene type direction distance location
AMCG00013638 NA coding upstream 55697 38188374 ~ 38194330 (+)
AMCG00013631 NA coding upstream 128223 38118324 ~ 38121804 (+)
AMCG00013630 LOC101464407 coding upstream 162216 38077005 ~ 38087811 (+)
AMCG00013625 NA coding upstream 196466 38051221 ~ 38053561 (+)
AMCG00013626 slc8a2,LOC105026810,LOC106612604,LOC106580848,LOC103476200 coding upstream 205477 38032609 ~ 38044550 (+)
AMCG00013640 NA coding downstream 93154 38345817 ~ 38353162 (+)
AMCG00013646 NA coding downstream 129806 38382469 ~ 38398767 (+)
AMCG00013647 napa,LOC108413256,LOC103368726 coding downstream 199126 38451789 ~ 38458783 (+)
AMCG00013648 NA coding downstream 214869 38467532 ~ 38468896 (+)
AMCG00013649 NA coding downstream 224304 38476967 ~ 38478698 (+)
G45862 NA non-coding upstream 3609 38245956 ~ 38246418 (+)
G45860 NA non-coding upstream 6875 38238539 ~ 38243152 (+)
G45854 NA non-coding upstream 37141 38211090 ~ 38212886 (+)
G45812 NA non-coding upstream 151496 38097990 ~ 38098531 (+)
G45805 NA non-coding upstream 176175 38073255 ~ 38073852 (+)
G45865 NA non-coding downstream 101251 38353914 ~ 38354711 (+)
G45941 NA non-coding downstream 164902 38417565 ~ 38474315 (+)
G45951 bckdha,LOC102788451 non-coding downstream 217391 38470054 ~ 38472706 (+)
G45990 NA non-coding downstream 272049 38524712 ~ 38525412 (+)
G45999 NA non-coding downstream 283865 38536528 ~ 38537058 (+)
G45850 NA other upstream 18697 38230566 ~ 38231330 (+)
AMCG00013629 hnrnpl2,LOC105006371 other upstream 180382 38054897 ~ 38069645 (+)
AMCG00013618 NA other upstream 428452 37818371 ~ 37821575 (+)
AMCG00013616 ccdc9 other upstream 432263 37805207 ~ 37817764 (+)
AMCG00013595 NA other upstream 922316 37315213 ~ 37327711 (+)
G45894 NA other downstream 117993 38370656 ~ 38373198 (+)
AMCG00013654 NA other downstream 311826 38564489 ~ 38566281 (+)
AMCG00013665 NA other downstream 392615 38645278 ~ 38673471 (+)
AMCG00013672 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC107572204 other downstream 403933 38656596 ~ 38707354 (+)
AMCG00013681 NA other downstream 559282 38811945 ~ 38821954 (+)

Expression


Co-expression Network