G46652


Basic Information

Item Value
gene id G46652
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 41845308 ~ 41893174 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU58160
GAGCCTGCTGTTCACTTCACCAGTGGGCTGTCAGACGTACACGCCCAGAAGGGTCATGCTGCAGAGCTCGTCTGTAAGCTGAATAGTGACCAGTCCAAAGGAGTTTGGTTTAAAGATGGGCAGAAGCTGTCTTCAAGAGATGGACTGACCATTTCTAAAGAAGGGGCCTGCCATAAGCTGACAATTGCCAAAGCTGATAAATCTAGTTCAGGGAAGTACCGGTTTGAAGCAGAAGGACACAAAACAGAAGCCCATGTAATTGTGGAAGaacaggacag

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58160 True 278 lncRNA 0.48 3 41845308 41893174

Neighbor

gene id symbol gene type direction distance location
AMCG00013761 NA coding upstream 57914 41764744 ~ 41787394 (+)
AMCG00013759 NA coding upstream 208083 41621764 ~ 41637225 (+)
AMCG00013755 NA coding upstream 240365 41594817 ~ 41604943 (+)
AMCG00013756 NA coding upstream 257369 41573978 ~ 41587939 (+)
AMCG00013760 NA coding upstream 292738 41549426 ~ 41552570 (+)
AMCG00013771 nudt3,LOC106566013 coding downstream 584497 42477671 ~ 42487364 (+)
AMCG00013774 pacsin1b coding downstream 662634 42555808 ~ 42569579 (+)
AMCG00013776 uhrf1bp1,LOC102796170 coding downstream 772108 42665282 ~ 42689203 (+)
AMCG00013780 anks1a,LOC107746333 coding downstream 825519 42718693 ~ 42723943 (+)
AMCG00013782 anks1a coding downstream 840371 42733545 ~ 42738221 (+)
G46538 NA non-coding upstream 431708 41413360 ~ 41413600 (+)
G46508 NA non-coding upstream 641159 41203064 ~ 41204149 (+)
G46455 NA non-coding upstream 959679 40882849 ~ 40885629 (+)
G46360 NA non-coding upstream 1419801 40416632 ~ 40425507 (+)
G46355 NA non-coding upstream 1432636 40391888 ~ 40412672 (+)
G46701 NA non-coding downstream 602572 42495746 ~ 42499599 (+)
G46730 NA non-coding downstream 799032 42692206 ~ 42692546 (+)
G46734 NA non-coding downstream 800488 42693662 ~ 42695623 (+)
G46739 NA non-coding downstream 810482 42703656 ~ 42792219 (+)
G46798 NA non-coding downstream 1084438 42977612 ~ 42980239 (+)
AMCG00013729 NA other upstream 1455367 40377732 ~ 40389941 (+)
G46345 NA other upstream 1471508 40350652 ~ 40373800 (+)
G46244 NA other upstream 2283008 39561973 ~ 39562300 (+)
AMCG00013681 NA other upstream 3023354 38811945 ~ 38821954 (+)
AMCG00013672 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC107572204 other upstream 3137954 38656596 ~ 38707354 (+)
AMCG00013770 NA other downstream 534927 42428101 ~ 42446480 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other downstream 751813 42644987 ~ 42648754 (+)
AMCG00013777 NA other downstream 757016 42650190 ~ 42661844 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other downstream 1146810 43039984 ~ 43044436 (+)
G46862 NA other downstream 1194115 43087289 ~ 43089643 (+)

Expression


Co-expression Network