G46701


Basic Information

Item Value
gene id G46701
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 42495746 ~ 42499599 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU58217
TCTCAATTGCATTTATACAGTGAAACTGCTATGAAACACCTCATGTTGGAGATTGCCCTTTATCAATTAATTGCAGGATGTATGTATTACAGGgggtttaaaatatttcaggtTAAATGTAAGGGGCCCCTTATGCAGAAAAAGGTTAAAAACCCACTAtagagacatttattttttctatacaATTGTGTAACCACCCCACAATGCTTTTCCCAGTCAAGCaacaatttcagattttattctGAAACTACCCATGTCATGTAGATGTATTTATCATACCTTAACCTTATGCTGCTATTGGACTGTGCATGTGCTAAATGTCTGCATAATACCATGCTTGTTGTTTTGTGAACAGATCTGTGCCTTTAGAACAGAGCTACTTTACTTCTCATACTTACAGATGAAAGTGGCCTTTCCAGAAAACTAATTTTTCCAAATCTTTTCCACATAAAGTGTTTTGCTGGATGTAATAAgtacatgtattaaaatgtgatttacagCTAAATTAATTCGATTTCACcttgcagatttatttaaatgtttggaaatgtcaCAGCTAGGACTGGGTAAGCAATAAACGAACTCtagaaaatgcagtttattaGCCATGCTAAATTGATCCTCAAAACTGCATTCCAACTTGCTTAATAACAAGATAACTCGTGCAACTGGCATCCGTcacttttaaacaaaaaacactggcatAGCATCAGTCAGGACAAAAGGCAAGAGTCCAGCAGGCTGAGTTGTATGACTTTATTATACAGAAACAGTGTGAAATTACTGAGGCTGCTGTCCTCTGCCACGCCCGAATCCACCTCTCTGATGGacagaaaaagggaaagaaaaagttaGCAATACATCACATCCATAACAGTGATTGGCCATTACTGAAATAAGACATGGAGCAGTTTCACTAATATTTAAAGACTCCAAACAAAGCCATCTAAGCTCTGTTAttctctaaaataaaataaaaagtggaatGGTGTATGAAAGTCACATTTCATGCTGCAAGACTTTAAATGTGAAGCTATGGTGAACTCAGATTATAGCGATCTGCCAGATAGCAAGTGCGCTGAAGGGGGAGAAGGTATACTTACGAACTGGAACTCAGTAGCTGCTCCAGCGCCGGCCTCTGCCTTCTTATCAGCACCAGCTGCAAGGTAAATTAAACACTTTCAGACCCGTTTCTCCAATAAAACTAGACCAGCTTGATTtgtacagttatttttcttctgcatcCGAGTGAGTTCACTGGCTCGCATGCAAGCAGTGACGCAGATTTATCTTCCCTCGCATGCAGACACAGATGCCAGAACTACTACTTCAGTTGAAGCCCAACGCATAAGTCAACTGTCATAGTGATGACTGGAGCACGATGCTGAACTCCTGTGCCACAAGAGCCCCCAGCGCCACTTAATGCAGGACAGGGGAGCGCGATGTACTTACGTGGTGCTGCCGAGCGCCTGTATGTGTCTCTGTCAGCCTCCCCACGGGCCAGACGAGCGGGCCTCTCACCTTCCAGACctTTTGGGTCGTGGCCTGGCTGTCTCGGGGCGGGTCTGGCGGCGCAGGGTAGCGGGCACAATTTCAGGGGGCAGGTGCAGGAAGTCCCTCAGGTACTGGATGCCCTCATTGGTCAGGTACCAGTAGAAGTGGCGCCAGGCAAACTGCTCCTTGACATACCCACAGGATTTCAGACTGCATGGCCTTCATGACGTGGAGGTTGGGCACGTTCTTGTCTGCCAGCTCGGGGTGCTTGGGCAGATGGACATCCTTCTTGGCCACCATAACTCCCTCCTTGAAGAGGAGTTCGTAGATAGCAATGCGGTCCTTTTTTGGCATCAACATCTGCAGAGACCAGAGAGAGGAGGCTTGAAATGCTTTTTCGCCCCTGGAATTATTTGATGAAGGTGAGTTTTTCAAAAGAAGGGTGTAATGGCCTGTGTAGATGCCAGATCTCAAGGCAACTCCATGTACCTTGCAATGAAAGCCACTACGTACAACCAGGTCCCCACAAATGTAATCTGCGGTGCTGCATTTGAACGGGGAATCATTAATAGCGAACAGGAATATGCAAACCGCATTACATGCATCTCGTATGCCAAGCAATGCAATCTTGGCCTACATGTAACATTCATAGAAATGCAACCAAGACTCTTGGCGCTAATGTTGTATATCGCACAACACACACGGCACACTTACAATAAGCCGGTGTGTAATGGAGTTGTGCGCTATAACCTGTACAGAGGCTGTAAACAGACTGAAACATGACGGCAGAAACTACAGGATGCAATGCGAGCCCTGCGATGCTCAACGCCGTTCAACACATTTACGAAACTGTAACCGCCACCTTAGTTATGGCGCTAAATCTGACCAAACTCTTCAATCCCAGGACAAGTCCTAACGTCACGCTTCTCTGATTAAGCCACATTTCTAACCATATGCTCCGTTTCGTGTCATTTTCAAGTGCCGAGTGCAGGAGAGGCCTACTCCCCGACTCCACCATCAGCCTAAGCGTTTAACATCCGATTATCAACACCAGCGAAACGCACTTTCTCACAAATATCACAACACAGATCGGTACGGAATACATTTGGGACCTGAAACGgtgttaaaaatgtgatttgggTAACGATGTTAACGATATGATGCCGATAATGGAGCGAGATCAATCGCCTACCTCTGCAGCTTGATAGGGGACCGGAGCCGGAAAGGAAGGAGCATGCGCACTGTGCAC

Function

GO: NA

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU58217 True 2743 lncRNA 0.45 3 42495746 42499599

Neighbor

gene id symbol gene type direction distance location
AMCG00013771 nudt3,LOC106566013 coding upstream 8382 42477671 ~ 42487364 (+)
AMCG00013761 NA coding upstream 708352 41764744 ~ 41787394 (+)
AMCG00013759 NA coding upstream 858521 41621764 ~ 41637225 (+)
AMCG00013755 NA coding upstream 890803 41594817 ~ 41604943 (+)
AMCG00013756 NA coding upstream 907807 41573978 ~ 41587939 (+)
AMCG00013774 pacsin1b coding downstream 56209 42555808 ~ 42569579 (+)
AMCG00013776 uhrf1bp1,LOC102796170 coding downstream 165683 42665282 ~ 42689203 (+)
AMCG00013780 anks1a,LOC107746333 coding downstream 219094 42718693 ~ 42723943 (+)
AMCG00013782 anks1a coding downstream 233946 42733545 ~ 42738221 (+)
AMCG00013783 anks1a,LOC102790859,LOC106572349 coding downstream 285828 42785427 ~ 42814143 (+)
G46652 NA non-coding upstream 602572 41845308 ~ 41893174 (+)
G46538 NA non-coding upstream 1082146 41413360 ~ 41413600 (+)
G46508 NA non-coding upstream 1291597 41203064 ~ 41204149 (+)
G46455 NA non-coding upstream 1610117 40882849 ~ 40885629 (+)
G46360 NA non-coding upstream 2070239 40416632 ~ 40425507 (+)
G46730 NA non-coding downstream 192607 42692206 ~ 42692546 (+)
G46734 NA non-coding downstream 194063 42693662 ~ 42695623 (+)
G46739 NA non-coding downstream 204057 42703656 ~ 42792219 (+)
G46798 NA non-coding downstream 478013 42977612 ~ 42980239 (+)
G46814 NA non-coding downstream 499140 42998739 ~ 42999135 (+)
AMCG00013770 NA other upstream 49266 42428101 ~ 42446480 (+)
AMCG00013729 NA other upstream 2105805 40377732 ~ 40389941 (+)
G46345 NA other upstream 2121946 40350652 ~ 40373800 (+)
G46244 NA other upstream 2933446 39561973 ~ 39562300 (+)
AMCG00013681 NA other upstream 3673792 38811945 ~ 38821954 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other downstream 145388 42644987 ~ 42648754 (+)
AMCG00013777 NA other downstream 150591 42650190 ~ 42661844 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other downstream 540385 43039984 ~ 43044436 (+)
G46862 NA other downstream 587690 43087289 ~ 43089643 (+)
G46945 NA other downstream 938893 43438492 ~ 43440698 (+)

Expression


Co-expression Network