G46734


Basic Information

Item Value
gene id G46734
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 42693662 ~ 42695623 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU58257
GTGGCAATACTCTAGCCAGGAGCAACCCagatgcaagttttttttttttgcacatggTTTTAATAGGATCCACTGGTTTAAATATGCTTTCATTGTGCTTTACTGCATTCTACCATTAATCAACTATGGTGTACCATAGTACACATGCCTAATTTATCCTGATTTTTGCAGTATTCCCACACTCCCATGTTGTAAAGCATAGGGAAGGCATGCTGATCCAATAGGAAACCATTGTAAATCAATGGTCAAATCCTATTAAAAGTGCATACATCCCATGGTCAATTTACCAGGATAAAGATGCATAAGGGAACCAGAGTTTGACATGACTTTGCTTGTTCATATTCATGTTCTGGTTCACATCCAAAACTGCATTCTTTGCCTTTTTAGTTTCTGAGCTGCAGTACCAGCATTTTCGTTTAACATTTCAATCAAAAATACACCCAACTTGTGCttctaactttttttaattgacaataGCCCAGTCTGTACTCATTCTGTCCTGAGTAGGACTTCTAAATCAATGTTTGTCAACACAATTGAAGACTGCGAGTGAAAGTCTGCCAAATCTCAAGCACTGTTTGCTTTTGGTACGTTCAGTTTTCATTTAACCATTGCCAACTGTTCTGGAATAATACATCACTGTACTGTTTCTGTGAAATGAATGCGAACAGGGGTCTAATCTGAGAAGTGTGGGTGATATTGCTGGGGTCTGACACATACTCAAAAGTGCAGCCAGGACACAGTAGTACAGAAATGTACATCTCTACCCGTAGGTGCAGTTTCTTCCATGTAATAAGTCTTGCAGTTCAAGCTAACTagctttaaagctttaaaataaccGTCTAAATATAGTGATCAATTTTGAGGGTAAACCATCCCATTTAAGGGAATCTTTCAggcagaaaatgtatacatgtgcATTCTGAGTAGTTTTGACATattccatgtttttaatttttaatcccATCAGAAAATGTCCTAAATCCCATAATTAGAATAAAATGAACTGCCACTGAATGAAACATGAATGCTGGGAGGTTTAATGGAACCCGGGGAGATGGTCTCATGGAATTCCAGATGTTAATGAAATGTCAAAAGTACTTTGCATGTACATATGTGCTTCTGTCTAATAGTATATGTAGGgtgtcatataaatatatatagtttttaaatgtttgaaccccttaaaaaaaatgcactgaCAGTTGTTTCAAAGTACATCCTAAAAGTGAGGCACGTTTGCTGGTCCGTTTCCATTTCAAATGGCATGCTGTTACTTAGGTCTCAGTTTCCTTGTCTCTCTTCTGtcacttttgcaaggcactctGTACATATCCAATCTGGCACTCTCAAACGGATGGCGCAGAGTGCGGTGTTGTGAAACATGGTCTCAGATTTGGTGCTGCTCAGTACATAGTCCGGCACATTTCAGATCCTCAAAATCAAGTTAAAATGTTCTAAAGCATGGAAcctttttgttcgttttttttttgtaaataactTTGTTTACGAACTAACCCAAGAACCAGAAGCGGGGGCATGTATTATAACCGTGCAGGAACAAAATGGCCACAGTTTACAGCACTAGTGACACAAACTGATCAAAGCTTTGTAAACTAGTTACCTCTTCTGTTGGATTCAAGCTTGGGAATGGCCTGAGTTTGCAGTCCACTGTAAGTACAGCTCACTACAGATTGCACATGCTTGAACTGAATGTGGAATCGCAGGAAACACACTCCGTGTTCGAGGTCCGGGCCAGCCCAGTCGCACTGTTCTGGAGTCTCTCTGacagtattttaacttattttaagattttgaatttaaacctttttagactgtgttttttaaatgtcactatGCTATTGGATTTTGAAATGGGTTCTGTGAACCAGTATTGTATGTGTGAGAATATTTctaagttaaattaataaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58257 True 1933 lncRNA 0.38 2 42693662 42695623

Neighbor

gene id symbol gene type direction distance location
AMCG00013776 uhrf1bp1,LOC102796170 coding upstream 4459 42665282 ~ 42689203 (+)
AMCG00013774 pacsin1b coding upstream 124083 42555808 ~ 42569579 (+)
AMCG00013771 nudt3,LOC106566013 coding upstream 206298 42477671 ~ 42487364 (+)
AMCG00013761 NA coding upstream 906268 41764744 ~ 41787394 (+)
AMCG00013759 NA coding upstream 1056437 41621764 ~ 41637225 (+)
AMCG00013780 anks1a,LOC107746333 coding downstream 23070 42718693 ~ 42723943 (+)
AMCG00013782 anks1a coding downstream 37922 42733545 ~ 42738221 (+)
AMCG00013783 anks1a,LOC102790859,LOC106572349 coding downstream 89804 42785427 ~ 42814143 (+)
AMCG00013785 scube1,LOC107550129 coding downstream 146952 42842575 ~ 42866909 (+)
AMCG00013786 scube3,LOC106566910 coding downstream 197643 42893266 ~ 42936143 (+)
G46730 NA non-coding upstream 1116 42692206 ~ 42692546 (+)
G46701 NA non-coding upstream 194063 42495746 ~ 42499599 (+)
G46652 NA non-coding upstream 800488 41845308 ~ 41893174 (+)
G46538 NA non-coding upstream 1280062 41413360 ~ 41413600 (+)
G46508 NA non-coding upstream 1489513 41203064 ~ 41204149 (+)
G46739 NA non-coding downstream 8033 42703656 ~ 42792219 (+)
G46798 NA non-coding downstream 281989 42977612 ~ 42980239 (+)
G46814 NA non-coding downstream 303116 42998739 ~ 42999135 (+)
G46861 NA non-coding downstream 390767 43086390 ~ 43086600 (+)
G46905 NA non-coding downstream 655230 43350853 ~ 43352415 (+)
AMCG00013777 NA other upstream 31818 42650190 ~ 42661844 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other upstream 44908 42644987 ~ 42648754 (+)
AMCG00013770 NA other upstream 247182 42428101 ~ 42446480 (+)
AMCG00013729 NA other upstream 2303721 40377732 ~ 40389941 (+)
G46345 NA other upstream 2319862 40350652 ~ 40373800 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other downstream 344361 43039984 ~ 43044436 (+)
G46862 NA other downstream 391666 43087289 ~ 43089643 (+)
G46945 NA other downstream 742869 43438492 ~ 43440698 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other downstream 2339149 45034772 ~ 45095669 (+)
G47206 NA other downstream 2631035 45326658 ~ 45360882 (+)

Expression


Co-expression Network